PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00037353001
Common NameGSBRNA2T00037353001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 251aa    MW: 27601.4 Da    PI: 4.7172
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00037353001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.6e-1791139254
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                           y+GVr ++ +g+Wv+eIr+p++   + r++lg++ ta++Aa+a++ a+++++
  GSBRNA2T00037353001  91 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTADMAARAHDVAALAIK 139
                          69****998.**********843...6**********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.75E-1791139IPR016177DNA-binding domain
PfamPF008475.1E-1291139IPR001471AP2/ERF domain
PROSITE profilePS5103219.83691151IPR001471AP2/ERF domain
SMARTSM003804.2E-2791152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-2691147IPR001471AP2/ERF domain
PRINTSPR003675.0E-1092103IPR001471AP2/ERF domain
CDDcd000182.81E-2392133No hitNo description
PRINTSPR003675.0E-10114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
METHLNIEKS ASQVTLTSSA IFAVSSSSSS SSSTPSFSPP LTSSSSSSIT LNFSEDTNSK  60
RKASRRSLPV LEDDENVVKQ RKTSGGDKHP TYRGVRMRSW GKWVSEIREP RKKSRIWLGT  120
YPTADMAARA HDVAALAIKA AAVNWQDSDV AALEEAEPSR EVMAQSLSGS VVFSSDITTR  180
EMSETSCADK ESDEEKLFDL PDLFNDEMMI RDDAFCYYSS TWQLCGADVD EPSYFFNDLN  240
HTPAHSLTPN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1386142966Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00037353001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893992e-80AC189399.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB056I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634433.11e-151PREDICTED: ethylene-responsive transcription factor ERF034-like
RefseqXP_013665710.11e-151ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ73e-79ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A078GQC60.0A0A078GQC6_BRANA; BnaC04g50030D protein
STRINGBo4g195280.11e-150(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.15e-59ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]