PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00037347001 | ||||||||
Common Name | GSBRNA2T00037347001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GATA | ||||||||
Protein Properties | Length: 257aa MW: 28160.2 Da PI: 7.7784 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.2 | 2.2e-18 | 171 | 205 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + kTp+WR gp g+ktLCnaCG+++++ +l GSBRNA2T00037347001 171 CTHCASDKTPQWRTGPLGPKTLCNACGVRFKSGRL 205 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 1.4E-85 | 2 | 256 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 5.4E-15 | 165 | 215 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.187 | 169 | 201 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.04E-14 | 169 | 229 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.8E-13 | 169 | 203 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.37E-14 | 170 | 217 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 171 | 196 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.9E-16 | 171 | 205 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MDVYGLSSQD LLRVDDLLDF SNEDIFSASS STSTAAPSSS SFPPQNPNYH HHLPSSADHS 60 FLHDICVPSD DAAHLEWLSQ FVDDSFADFP ANPLGGTMTS VKTETSFTGK PTSKRSKPPA 120 ALVGTWAPMS EPDQNIHVTG RSKPKKEHSN GGGRHQSSSA ETAEGAGLRR CTHCASDKTP 180 QWRTGPLGPK TLCNACGVRF KSGRLVPEYR PASSPTFVLT EHSNSHRKVM ELRRQKEVMR 240 QPHQVQLHHH HHHPSF* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in flowers and leaves, and to a lower extent in stems. {ECO:0000269|PubMed:12139008}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00037347001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013635109.1 | 0.0 | PREDICTED: GATA transcription factor 2-like | ||||
Swissprot | O49741 | 1e-126 | GATA2_ARATH; GATA transcription factor 2 | ||||
TrEMBL | A0A078GQC1 | 0.0 | A0A078GQC1_BRANA; GATA transcription factor | ||||
STRING | Bo4g195320.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3203 | 26 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45050.1 | 1e-124 | GATA transcription factor 2 |
Publications ? help Back to Top | |||
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