PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00037152001
Common NameGSBRNA2T00037152001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 374aa    MW: 41342.6 Da    PI: 5.4676
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00037152001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.6e-184388147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +g+W+teEd  l ++v +lG+++W++Iar ++ gR++k+c++rw + 
  GSBRNA2T00037152001 43 KGPWSTEEDAVLTKLVSKLGPRNWSLIARGIP-GRSGKSCRLRWCNQ 88
                         79******************************.***********985 PP
2Myb_DNA-binding52.98.3e-1795139147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r++++ eEd  ++ a++ +G++ W+ Ia+ ++ gRt++ +k++w++ 
  GSBRNA2T00037152001  95 RKPFSDEEDHMIISAHAIHGNK-WAVIAKLLP-GRTDNAIKNHWNST 139
                          789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.4773893IPR017930Myb domain
SuperFamilySSF466891.13E-3040136IPR009057Homeodomain-like
SMARTSM007174.6E-154291IPR001005SANT/Myb domain
PfamPF002496.9E-174388IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-254496IPR009057Homeodomain-like
CDDcd001673.81E-144587No hitNo description
SMARTSM007172.7E-1594142IPR001005SANT/Myb domain
PROSITE profilePS5129421.67794144IPR017930Myb domain
PfamPF002493.9E-1595139IPR001005SANT/Myb domain
CDDcd001671.54E-1197140No hitNo description
Gene3DG3DSA:1.10.10.601.0E-2397143IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MDRSEPLPFP SSADSDEVTT AAAELAAGDS SGGGYEIIKS KVKGPWSTEE DAVLTKLVSK  60
LGPRNWSLIA RGIPGRSGKS CRLRWCNQLD PCLKRKPFSD EEDHMIISAH AIHGNKWAVI  120
AKLLPGRTDN AIKNHWNSTL RRKYADLWKN SNQVTTAYIK NENVEQQLPQ EEIVSPPEVP  180
QVVDVTMYDE PTQVLDDVTM DDASPNEPQE QAPPIESSIP VFRPVARAGA FRVYNPTSQR  240
NGYRDHNVVP CEGPLIQAAK PDSLAGKFLQ SLCGEPNIPS KCGHGCSTHP TEYGKSVLGA  300
EFVDYEEPCP VFNQELISIA TDLNNIAWIK SGLDNAIVRE AEQNLKMDQI TFSDPRIRFS  360
GMMPRQHFFC ARS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-39421433104C-Myb DNA-Binding Domain
1msf_C2e-39421433104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00037152001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269|PubMed:15258262}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747540.0KF974754.1 Brassica napus MYB transcription factor 109-1 (MYB109-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013712505.10.0transcription factor MYB25 isoform X1
SwissprotO041921e-116MYB25_ARATH; Transcription factor MYB25
TrEMBLA0A078GPL80.0A0A078GPL8_BRANA; BnaA09g35310D protein
TrEMBLA0A3P5YN150.0A0A3P5YN15_BRACM; Uncharacterized protein
STRINGBra007186.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56382747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.10.0myb domain protein 109
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]