PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00037075001
Common NameGSBRNA2T00037075001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 331aa    MW: 38429.1 Da    PI: 4.8931
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00037075001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM45.62.3e-141662681113
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev..diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lp G++F+Ptd e+   +Lk+k+ g+++e+  + +e   di+++ P+dLp   + ee++wy+++ +++    g++  r    + W    +
  GSBRNA2T00037075001 166 LPEGLHFRPTDLEMA-MFLKQKALGQPIEACII-PEErhDIFSIPPRDLPG--YPEETHWYYYCWKST----GQQDPR----SLWTRFRE 243
                          699**********99.9************9655.44437***********4..34789******9854....677777....48****** PP

                  NAM  89 dkevlskkgelvglkktLvfykgra 113
                          d++v++++++ v +k+ +++ ++++
  GSBRNA2T00037075001 244 DTAVFDEEENCVAIKRRFTLVEQEE 268
                          ******99999******99996544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037351.8E-5114148IPR005491ENT domain
SuperFamilySSF1019418.89E-18164310IPR003441NAC domain
PROSITE profilePS5100518.138166310IPR003441NAC domain
PfamPF023652.1E-4167290IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MADKKDLDPN HPAEDGTFLC PVKKRAIAER SLTGFGRAHE PEFKKQRLEQ LQRKAYHSVL  60
LASKSESSGT SHEKNASWMI PNSLPNPESL VGKRVHARSP DDEDDDSPTN KKIKLHKQAY  120
DHVLHAFNAE SPALSHSRTL IMQHLLDECN NKAHINKIVE PRSRLLPEGL HFRPTDLEMA  180
MFLKQKALGQ PIEACIIPEE RHDIFSIPPR DLPGYPEETH WYYYCWKSTG QQDPRSLWTR  240
FREDTAVFDE EENCVAIKRR FTLVEQEEEC NDVFLPDEEE PPVEEWFIKE ISLPPSVADS  300
EFVLCHVVLK KREKMKEEEE YYEEEEEEED *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00037075001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894561e-175AC189456.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073D09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013659872.10.0uncharacterized protein LOC106364941 isoform X1
TrEMBLA0A078GRD20.0A0A078GRD2_BRANA; BnaA09g35990D protein
STRINGBra007254.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1945367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.12e-47NAC family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]