PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00036772001
Common NameGSBRNA2T00036772001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 302aa    MW: 34156.1 Da    PI: 4.7673
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00036772001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573102.82.8e-3234128397
               DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                          ++r+w+e+De+++L+Gl++++ kt  +ps d+d+f+ fv++si++++sk+ql++K+r+L++Kf  +++++++g++p f++  d+++f++s
  GSBRNA2T00036772001  34 IKRIWNEDDELSILKGLVEYRVKTRHDPSFDWDGFFCFVQGSIHVRFSKEQLFSKVRKLRRKFVLHMERIDRGEDPLFTRLTDSQAFGYS 123
                          68**************************************************************************************** PP

               DUF573  93 kkiWg 97 
                          ++iWg
  GSBRNA2T00036772001 124 NMIWG 128
                          ****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.7E-2635128IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MATLKRLNFS DTCLQKSPSE EVSTKKKKLA SPVIKRIWNE DDELSILKGL VEYRVKTRHD  60
PSFDWDGFFC FVQGSIHVRF SKEQLFSKVR KLRRKFVLHM ERIDRGEDPL FTRLTDSQAF  120
GYSNMIWGLN QGEVAANGGG TEKAPGDTQE DEPLDNAGRV NDNGDESSKL DGKDSEFADG  180
GMENVMQIES DENASREKGR VSNDEPVNEN GAEKGELDGK ESHDDDDDEL RVVEDAFETT  240
ILQGLSDWQR NLQLKKLMMN LGTEKRKELS NEWKALCSEE VKLKIKKLRF TVKLVEAAND  300
G*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.216510.0flower| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the apical meristem and young leaf primordia. Detected in the vascular tissues of cotyledons and leaves, in hydathodes and at the base of flowers and siliques, but not in roots. {ECO:0000269|PubMed:18162594}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May play redundant roles with GEBP and GPL2 in cytokinin responses by regulating the transcript levels of type-A ARR response genes (PubMed:18162594). Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269|PubMed:21875893, ECO:0000305|PubMed:18162594}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00036772001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589882.10.0PREDICTED: uncharacterized protein LOC106298324 isoform X2
SwissprotQ8VYD24e-73STKLH_ARATH; GLABROUS1 enhancer-binding protein-like 1
TrEMBLA0A078GNW20.0A0A078GNW2_BRANA; BnaC06g12070D protein
TrEMBLA0A0D3CSS70.0A0A0D3CSS7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FT810.0A0A3P6FT81_BRAOL; Uncharacterized protein
STRINGBo6g057560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61171741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25650.13e-75DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]
  3. Nietzsche M, et al.
    STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1.
    Plant Physiol., 2018. 176(2): p. 1773-1792
    [PMID:29192025]