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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00036647001 | ||||||||
Common Name | GSBRNA2T00036647001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 118aa MW: 14433.7 Da PI: 9.0855 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.5 | 0.00028 | 44 | 63 | 10 | 29 |
HHHHHHHHHHHHHHHCTSCC CS HLH 10 rrRRdriNsafeeLrellPk 29 ++R++++ + ++eL++l P GSBRNA2T00036647001 44 KKRMNKMADEIAELKSLCPM 63 9***************9886 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MDLWEEKKNK REKMKEYFDI VHNDGLHFRQ PWVFDVQEEV QRLKKRMNKM ADEIAELKSL 60 CPMVHEFRYC TRTQKYQALT SHFHILVYDS DAFWFFRLEL RSELLLGKNA QVYLRTK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00036647001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A078GK43 | 3e-82 | A0A078GK43_BRANA; BnaA05g17870D protein | ||||
STRING | Bra010195.1-P | 3e-41 | (Brassica rapa) |
Publications ? help Back to Top | |||
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