PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00036630001

Common Name

GSBRNA2T00036630001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 309aa MW: 35758.9 Da PI: 6.2354

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00036630001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164	5.6e-51	16	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatg 87 +ppGfrFhPt+eel+++yL+kkv+++k++l +vi+evd++k+ePwd++++++ +++wyfFs++dkky+tg+r+nrat +g+Wkatg GSBRNA2T00036630001 16 VPPGFRFHPTEEELLHYYLRKKVHSQKIDL-DVIREVDLNKLEPWDIQEECRIgltPQNDWYFFSHKDKKYPTGTRTNRATVAGFWKATG 104 69**************************.9***********963333233567*************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +dk ++s + +gl+ktLvfykgrap+gek+dW+mheyrl GSBRNA2T00036630001 105 RDKIIYS-CVRRIGLRKTLVFYKGRAPHGEKSDWIMHEYRL 144 **9.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.67E-57	12	177	IPR003441	NAC domain
PROSITE profile	PS51005	55.696	16	177	IPR003441	NAC domain
Pfam	PF02365	6.2E-27	17	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MAEKNVNLSI NGQSKVPPGF RFHPTEEELL HYYLRKKVHS QKIDLDVIRE VDLNKLEPWD 60 IQEECRIGLT PQNDWYFFSH KDKKYPTGTR TNRATVAGFW KATGRDKIIY SCVRRIGLRK 120 TLVFYKGRAP HGEKSDWIMH EYRLDDTPTS NGCSDVVTED PMSYNEDGWV VCRVFRKKNY 180 QKIDDSPKIT LFSSPDDTDE NRRPTTFHNT LNATVLDHVL LCMDRSEKIT GRPGCSNWAS 240 LDRLVAWQLN NGHHTCDRTS FDEEEDGDAM MQRWDLHWNN DDNVDIWSSF AESSSSPSSL 300 DPLLHLSV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-48	13	179	14	167	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-48	13	179	14	167	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-48	13	179	14	167	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-48	13	179	14	167	NO APICAL MERISTEM PROTEIN
3swm_A	1e-48	13	179	17	170	NAC domain-containing protein 19
3swm_B	1e-48	13	179	17	170	NAC domain-containing protein 19
3swm_C	1e-48	13	179	17	170	NAC domain-containing protein 19
3swm_D	1e-48	13	179	17	170	NAC domain-containing protein 19
3swp_A	1e-48	13	179	17	170	NAC domain-containing protein 19
3swp_B	1e-48	13	179	17	170	NAC domain-containing protein 19
3swp_C	1e-48	13	179	17	170	NAC domain-containing protein 19
3swp_D	1e-48	13	179	17	170	NAC domain-containing protein 19
4dul_A	1e-48	13	179	14	167	NAC domain-containing protein 19
4dul_B	1e-48	13	179	14	167	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Stems and roots, specifically in interfascicular fibers (sclerenchyma), cells differentiating into vascular vessels (cambium), and xylem. {ECO:0000269\|PubMed:15923329, ECO:0000269\|PubMed:17114348, ECO:0000269\|PubMed:17237351, ECO:0000269\|PubMed:17565617}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening and lignification of sclerenchymatous fibers and secondary xylem vessels (tracheary elements). Seems to repress the secondary cell wall thickening of xylary fibers. May also regulate the secondary cell wall lignification of other tissues. Binds to and activates the promoter of MYB46. {ECO:0000269\|PubMed:17114348, ECO:0000269\|PubMed:17237351, ECO:0000269\|PubMed:17333250, ECO:0000269\|PubMed:17565617, ECO:0000269\|PubMed:17890373}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00036630001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF974755	0.0	KF974755.1 Brassica napus NAC transcription factor 12-1 (NAC12-1.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009151451.1	0.0	PREDICTED: LOW QUALITY PROTEIN: NAC domain-containing protein 12-like
Refseq	XP_013727089.1	0.0	LOW QUALITY PROTEIN: NAC domain-containing protein 12
Swissprot	Q9LPI7	0.0	NAC12_ARATH; NAC domain-containing protein 12
TrEMBL	A0A078GP12	0.0	A0A078GP12_BRANA; BnaA05g17950D protein
TrEMBL	M4D134	0.0	M4D134_BRARP; Uncharacterized protein
STRING	Bra010183.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM778	28	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32770.1	1e-180	NAC domain containing protein 12

Publications ? help Back to Top
Zhao Q, et al. Pinoresinol reductase 1 impacts lignin distribution during secondary cell wall biosynthesis in Arabidopsis. Phytochemistry, 2015. 112: p. 170-8 [PMID:25107662] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Fernández-Pérez F,Vivar T,Pomar F,Pedreño MA,Novo-Uzal E Peroxidase 4 is involved in syringyl lignin formation in Arabidopsis thaliana. J. Plant Physiol., 2015. 175: p. 86-94 [PMID:25506770] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Yuan Y,Teng Q,Zhong R,Ye ZH TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan. Plant Cell Physiol., 2016. 57(1): p. 35-45 [PMID:26556650] Huang J,Chen F,Wu S,Li J,Xu W Cotton GhMYB7 is predominantly expressed in developing fibers and regulates secondary cell wall biosynthesis in transgenic Arabidopsis. Sci China Life Sci, 2016. 59(2): p. 194-205 [PMID:26803299] Pascual MB, et al. PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine. Plant Biotechnol. J., 2018. 16(5): p. 1094-1104 [PMID:29055073]