PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00036365001

Common Name

GSBRNA2T00036365001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ZF-HD

Protein Properties

Length: 264aa MW: 29038.5 Da PI: 9.0145

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00036365001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	102.5	2.8e-32	35	90	2	58
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++vrY+eClkNhAa++Gg + DGCgEfmps geegt +al+CaAC+CHRnFHR+ev+ GSBRNA2T00036365001 35 TTVRYRECLKNHAANVGGSVHDGCGEFMPS-GEEGTLEALRCAACDCHRNFHRKEVD 90 689************************9.999******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	6.0E-26	36	90	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.5E-29	37	89	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.1E-29	38	89	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.135	39	88	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	4.48E-20	181	253	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.1E-31	186	253	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	5.1E-30	192	248	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MDMRSHEMIE RRSDDNGNND HHQSKSSSIS AAAKTTVRYR ECLKNHAANV GGSVHDGCGE 60 FMPSGEEGTL EALRCAACDC HRNFHRKEVD GVGSSAHPHR HHHQYGGGGG RRPPPPNMML 120 NPLMLPPPPN YAQMHHHKYG MSPPSGMVTP MSVAYGGGGG GAESSSEDLN MYGQSSGEHG 180 GGATVGQMGF SKKRFRTKFT TEQKERMMEF AEKLGWRMNK QDEEELKRFC NEIGVKRQVF 240 KVWMHNNKSN AKKPTTTTTP GTL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	4e-22	191	250	16	75	ZF-HD homeobox family protein
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.6506	1e-123	leaf\| microspore\| seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269\|PubMed:16428600, ECO:0000269\|PubMed:21059647, ECO:0000269\|PubMed:21779177}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00036365001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269\|PubMed:21779177}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353274	1e-171	AK353274.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-24-B06.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013616018.1	1e-145	PREDICTED: zinc-finger homeodomain protein 5-like isoform X4
Refseq	XP_013616020.1	1e-145	PREDICTED: zinc-finger homeodomain protein 5-like isoform X6
Swissprot	Q9FRL5	1e-107	ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBL	A0A078J7A8	0.0	A0A078J7A8_BRANA; BnaA02g35950D protein
STRING	Bo2g082590.1	1e-144	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7279	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75240.1	1e-101	homeobox protein 33

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]