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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00036146001 | ||||||||
Common Name | GSBRNA2T00036146001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 204aa MW: 22892.7 Da PI: 7.1268 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 85.8 | 3.9e-27 | 107 | 165 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+W+KYGq+ + g++++r YY+Ct+agC vkk+ver a++ k ++itY g+H+h+ GSBRNA2T00036146001 107 LDDGYSWKKYGQRLIMGNQNTRFYYKCTFAGCDVKKHVERRADNVKSLVITYYGNHEHD 165 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-27 | 96 | 167 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.45E-24 | 101 | 167 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.91 | 102 | 167 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.6E-26 | 107 | 166 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-21 | 108 | 165 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MEMTSYSASQ LIFSIAPPSP VAIIRPPEMV ESSGGNHATM MLSNNGLPHQ RMDVDQALED 60 HNIIDLNVVP SSPKTREDEV SNIIGTLRAG RYNEGVIIQM ESEENNLDDG YSWKKYGQRL 120 IMGNQNTRFY YKCTFAGCDV KKHVERRADN VKSLVITYYG NHEHDAPVQR RKCYSLKKRS 180 GSSMFQDASN RTPRVNSSEG ETV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 7e-23 | 98 | 168 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 7e-23 | 98 | 168 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.27015 | 7e-90 | seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00036146001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM593143 | 0.0 | KM593143.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY40) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009106855.1 | 1e-145 | PREDICTED: probable WRKY transcription factor 10 | ||||
TrEMBL | A0A078JAD4 | 1e-152 | A0A078JAD4_BRANA; BnaCnng39890D protein | ||||
STRING | Bra030848.1-P | 1e-144 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19518 | 3 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55600.1 | 4e-30 | WRKY DNA-binding protein 10 |
Publications ? help Back to Top | |||
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