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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00036004001 | ||||||||
Common Name | GSBRNA2T00036004001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Trihelix | ||||||||
Protein Properties | Length: 546aa MW: 61139.6 Da PI: 8.4027 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 92.2 | 5.2e-29 | 57 | 141 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+++e+laL+++r+em++++r++ lk+plWe+vs+k+ e g++r++k+Ckek+en++k++k++ke++++r++++ t+++f+qlea GSBRNA2T00036004001 57 RWPREETLALLRIRSEMDSTFRDATLKAPLWEHVSRKLLELGYKRNAKKCKEKFENVQKYHKRTKETRGGRHEGK--TYKFFSQLEA 141 8********************************************************************985555..6*******85 PP | |||||||
2 | trihelix | 104.1 | 1e-32 | 340 | 424 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k+e+laLi++r+ me r++++ k+ lWee+s m++ g++r++k+Ckekwen+nk+ykk+ke++kkr +++ +tcpy+++l+ GSBRNA2T00036004001 340 RWPKEEILALINLRSGMEPRYQDNVPKGLLWEEISTSMKRMGYNRNAKRCKEKWENINKYYKKVKESNKKR-PQDAKTCPYYHRLD 424 8*********************************************************************8.99999*******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.934 | 50 | 114 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.017 | 54 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 3.0E-19 | 56 | 142 | No hit | No description |
CDD | cd12203 | 8.45E-24 | 56 | 121 | No hit | No description |
SMART | SM00717 | 0.0011 | 337 | 399 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 7.131 | 339 | 397 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 5.5E-22 | 339 | 424 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.4E-4 | 339 | 396 | IPR009057 | Homeodomain-like |
CDD | cd12203 | 4.27E-28 | 340 | 404 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 546 aa Download sequence Send to blast |
MEQGGGGGGN EVVEEASPIS SRPPANMEEL MRFSAAADDG GGFGGGGGSS SSSSGNRWPR 60 EETLALLRIR SEMDSTFRDA TLKAPLWEHV SRKLLELGYK RNAKKCKEKF ENVQKYHKRT 120 KETRGGRHEG KTYKFFSQLE ALNTSTTPAP PSSLDVTPLS VANPVQQPSS SSSQFPVFSL 180 TQTPPPSSTA SGMGSHKRKR ENRGTGGGKM MELFEGLVRQ VMQKQAAMQR SFLEALEKRE 240 QERLAREEAW KRQEMSRLAR EHEIMAQERA ASASRDAAII SLIQKITGHT IQLPHSLSSQ 300 PSPPPPAAKL LPPPPPHQPQ QQQQQEMIMS SDQSLPSSSR WPKEEILALI NLRSGMEPRY 360 QDNVPKGLLW EEISTSMKRM GYNRNAKRCK EKWENINKYY KKVKESNKKR PQDAKTCPYY 420 HRLDLLYSSK VLGSGAGSST SSLPQDQIST IQKQKPREET PQGAEKPEDL VMRELMQQKQ 480 QQEEDSMIGE YEKIEASHNY NMEEEEMDEE LDDDEKSAAY EIAFQSPANR GGNGHSEPPF 540 LTMVQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 99 | 107 | KRNAKKCKE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.25670 | 5e-90 | flower |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00036004001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC021045 | 1e-139 | AC021045.2 Arabidopsis thaliana chromosome I BAC T9L6 genomic sequence, complete sequence. | |||
GenBank | AC027035 | 1e-139 | AC027035.5 Arabidopsis thaliana chromosome 1 BAC T16O9 genomic sequence, complete sequence. | |||
GenBank | AJ003215 | 1e-139 | AJ003215.1 Arabidopsis thaliana GTL1 gene. | |||
GenBank | AY140085 | 1e-139 | AY140085.1 Arabidopsis thaliana DNA-binding factor, putative (At1g33240) mRNA, complete cds. | |||
GenBank | BT008824 | 1e-139 | BT008824.1 Arabidopsis thaliana At1g33240 mRNA, complete cds. | |||
GenBank | CP002684 | 1e-139 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009107944.1 | 0.0 | PREDICTED: trihelix transcription factor GTL1-like isoform X1 | ||||
Swissprot | Q39117 | 1e-114 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A078JCB4 | 0.0 | A0A078JCB4_BRANA; BnaCnng39380D protein | ||||
STRING | Bra036731.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6226 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33240.1 | 2e-83 | GT-2-like 1 |
Publications ? help Back to Top | |||
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