PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00035880001
Common NameGSBRNA2T00035880001, LOC106394458
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 336aa    MW: 37148.6 Da    PI: 6.3207
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00035880001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.5e-08256296954
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r+RR+ri +++  L++l+P       +K++ a++L +A +Y+k L
  GSBRNA2T00035880001 256 ARQRRERISEKIRVLQTLVPGG-----TKMDTASMLDEAANYLKFL 296
                          69******************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.123247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-13252311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-13253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.73E-11253301No hitNo description
Gene3DG3DSA:4.10.280.105.1E-12255305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-6256296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEGLESVYAQ AMYGMNRQNK ITEHQGSDLI WGGNELIPRE LCSSSFSSYQ LINPNLGSCF  60
MSDLGVIDEI QHQQHVGNRA ASIDPSSLEC LLSATTNTST EDDEGISALF SDCQTLWSFG  120
GGISSAESEN REITTDTTTK PKSLKRNRDE TGSHFRLVHH PQDDTEKGSF KLIYDENQTK  180
SKKPRTEKGG GSSNISFGHS ASLSDNAEPD AEAIAQMKEM IYRAAAFRPV NFGLETVEKP  240
KRKNVKISTD PQTVAARQRR ERISEKIRVL QTLVPGGTKM DTASMLDEAA NYLKFLRAQV  300
KALENLRPKL DPTNLSFSSP LFHPSFLPMQ NPNQI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256261RQRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.239551e-145vegetative meristem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00035880001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013690484.10.0transcription factor bHLH87
SwissprotQ8S3D20.0BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A078JA310.0A0A078JA31_BRANA; BnaCnng39100D protein
STRINGBo5g101160.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79602641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]