PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00035620001
Common NameGSBRNA2T00035620001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 288aa    MW: 30727.2 Da    PI: 9.1173
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00035620001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY77.22e-24156159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                         ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv    +r++ed ++++ tYeg+Hnh+
  GSBRNA2T00035620001  1 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIApSCPV----QRCSEDMSILISTYEGTHNHP 56
                         58***************************99**96....67899***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007743.9E-28157IPR003657WRKY domain
PROSITE profilePS5081123.146158IPR003657WRKY domain
SuperFamilySSF1182903.66E-21158IPR003657WRKY domain
PfamPF031061.8E-20256IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.9E-23258IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MNDGCQWRKY GQKIAKGNPC PRAYYRCTIA PSCPVQRCSE DMSILISTYE GTHNHPLPLS  60
ATAMASATSA AASMLLSGAS SSSSAAAADL HGLNFSLSGN SNIPKPKSPF LQTSSSGHPT  120
VTLDLTTSSS SQQPFLSMLN RFSAPPSNVS RSNSYPSTNL NFSNSTNTLM NWGGVGNRNE  180
QYRAAYGNIS TLQQSPYHHV IQTRIAGSSL DPFGRSSSYS PHPTQTNLDY VGIKSITHQV  240
QYLPAETIKA ITTNSNFQSA LATALSSIMG TDVKMDNVTR NEAEKSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-171581474WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00035620001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149369.10.0PREDICTED: probable WRKY transcription factor 61 isoform X1
RefseqXP_013724569.10.0probable WRKY transcription factor 61
RefseqXP_022559662.10.0probable WRKY transcription factor 61
SwissprotQ8VWV61e-151WRK61_ARATH; Probable WRKY transcription factor 61
TrEMBLA0A078GNE70.0A0A078GNE7_BRANA; BnaA06g13050D protein
TrEMBLM4EA850.0M4EA85_BRARP; Uncharacterized protein
STRINGBra025693.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126631729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.11e-125WRKY DNA-binding protein 61
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Gao R,Liu P,Yong Y,Wong SM
    Genome-wide transcriptomic analysis reveals correlation between higher WRKY61 expression and reduced symptom severity in Turnip crinkle virus infected Arabidopsis thaliana.
    Sci Rep, 2016. 6: p. 24604
    [PMID:27086702]