PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00035532001

Common Name

GSBRNA2T00035532001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 392aa MW: 45064.6 Da PI: 8.0696

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00035532001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.9	4.9e-27	74	155	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rr m+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k++++++ +s +++y++++e GSBRNA2T00035532001 74 WVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHHDRGN---RSAKMSYYKEIE 155 ******************************************************************95...566899*997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.5E-4	64	135	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.979	66	130	IPR017877	Myb-like domain
SMART	SM00717	0.0096	70	132	IPR001005	SANT/Myb domain
CDD	cd12203	3.36E-29	72	137	No hit	No description
Pfam	PF13837	3.6E-20	73	157	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MFVSDKPRPI DFYKDDNTTT ARDNMIIDVT TNAPGRDLHP HHHHHHLQPQ QILLGESSGE 60 DHEVKAPKKR AETWVQDETR SLIMFRRGMD GLFNTSKSNK HLWEQISAKM REKGFDRSPT 120 MCTDKWRNLL KEFKKAKHHD RGNRSAKMSY YKEIEEILRE RSKKVTATGQ YSKSSNATPT 180 AKVDSFMQFT DKGFDDPSIS FGSVEANGRP ALNLERRLDH DGHPLAIATV DAVAANGVPP 240 WNWRETPGNG KLRHMPFGGR VITVKFGDYT RRIGVDGSTE AIKDTIRSAF GLRTRRAFWL 300 EDEDQVVRCL DRDMPLGNYL LHIDDGLAIR VCHYDESNQL PVHTEEKVFY TEEDYRDFLA 360 RRGWTCLQFD GFRNIENMDD LQPGAVYRGV R*

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MFVSDKPRPI DFYKDDNTTT ARDNMIIDVT TNAPGRDLHP HHHHHHLQPQ QILLGESSGE  60
DHEVKAPKKR AETWVQDETR SLIMFRRGMD GLFNTSKSNK HLWEQISAKM REKGFDRSPT  120
MCTDKWRNLL KEFKKAKHHD RGNRSAKMSY YKEIEEILRE RSKKVTATGQ YSKSSNATPT  180
AKVDSFMQFT DKGFDDPSIS FGSVEANGRP ALNLERRLDH DGHPLAIATV DAVAANGVPP  240
WNWRETPGNG KLRHMPFGGR VITVKFGDYT RRIGVDGSTE AIKDTIRSAF GLRTRRAFWL  300
EDEDQVVRCL DRDMPLGNYL LHIDDGLAIR VCHYDESNQL PVHTEEKVFY TEEDYRDFLA  360
RRGWTCLQFD GFRNIENMDD LQPGAVYRGV R*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	2e-54	68	153	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00035532001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013731106.1	0.0	trihelix transcription factor GT-1-like isoform X2
Swissprot	Q9FX53	0.0	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A078GN89	0.0	A0A078GN89_BRANA; BnaA09g46250D protein
STRING	Bra026903.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2891	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]