PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00035391001
Common NameGSBRNA2T00035391001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 289aa    MW: 31831.7 Da    PI: 8.0575
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00035391001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.96.8e-19202236135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  GSBRNA2T00035391001 202 CTHCGVQKTPQWRAGPLGAKTLCNACGVRFKSGRL 236
                          *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.2E-991288IPR016679Transcription factor, GATA, plant
SuperFamilySSF577167.13E-14195258No hitNo description
SMARTSM004016.6E-15196250IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.859196232IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.1E-14200234IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.91E-14201249No hitNo description
PfamPF003201.0E-16202236IPR000679Zinc finger, GATA-type
PROSITE patternPS003440202227IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MESVELSLKN INRKEKPDDF SVDDLLDFSN DDVFVEDETK LKAVGVSVSL NNEITLNRGN  60
ELSTACEDFG SELAVPTDDL AELEWLSNFV EDSYSAPTKK PVWLTGDRRH PVAPVNEGLC  120
FKAPLPVKIR TKRARTGVNV WSLGSSSLTD SSSSSSSSSN PSSPLWLSGA EFLDENAVKR  180
QKKAKKKVLE NGGQTQTQTR RCTHCGVQKT PQWRAGPLGA KTLCNACGVR FKSGRLLPEY  240
RPACSPTFSS ELHSNHHRKV IQMRQKKEMS TDVDESGLNR TVQAVQSF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.194290.0seed
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00035391001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896278e-99AC189627.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS001M03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149294.10.0PREDICTED: erythroid transcription factor isoform X1
RefseqXP_018515391.10.0PREDICTED: erythroid transcription factor isoform X1
SwissprotQ9SD381e-106GATA6_ARATH; GATA transcription factor 6
TrEMBLA0A078GJ820.0A0A078GJ82_BRANA; GATA transcription factor
STRINGBra038882.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51080.13e-87GATA transcription factor 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]