PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00035335001 | ||||||||
Common Name | GSBRNA2T00035335001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HSF | ||||||||
Protein Properties | Length: 233aa MW: 26142.3 Da PI: 5.6838 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 25.2 | 4.4e-08 | 9 | 43 | 2 | 36 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHH CS HSF_DNA-bind 2 Flkklyeiledeelkeliswsengnsfvvldeeef 36 F +ye+++d++l+++isws++++sfv++d++e+ GSBRNA2T00035335001 9 FYAGVYEVVDDPSLDSIISWSKSNKSFVIWDSKEL 43 77889***************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 0.0014 | 5 | 80 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 4.9E-8 | 6 | 44 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.41E-7 | 6 | 45 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 4.8E-5 | 9 | 44 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MSWMGMSQFY AGVYEVVDDP SLDSIISWSK SNKSFVIWDS KELVFRDASA TSCHSLSAIF 60 VESEFAERRF VELISAPTAD RSQGQAGLMS LPADQFLYTP NLGWVYGING PKPVVRWALW 120 RNVKFISNRR GVRVTGRSID NGCEHRIDHA SVDRSTRVEN TRVLPTVMCA VAEEESLCYT 180 GRSIDDGCER RIDHDSIDRS AGYDIDSIDR SVGWVIQHAI DRSLERKVGP KE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.19089 | 2e-35 | flower| seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00035335001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A078GMT2 | 1e-170 | A0A078GMT2_BRANA; BnaC01g23850D protein | ||||
TrEMBL | A0A0D3A9R6 | 1e-170 | A0A0D3A9R6_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FDX4 | 1e-170 | A0A3P6FDX4_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g084910.1 | 1e-171 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5067 | 14 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77570.1 | 7e-10 | Winged helix-turn-helix transcription repressor DNA-binding |
Publications ? help Back to Top | |||
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