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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00034800001 | ||||||||
Common Name | GSBRNA2T00034800001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Trihelix | ||||||||
Protein Properties | Length: 358aa MW: 39369.6 Da PI: 9.321 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 53.1 | 8.5e-17 | 75 | 162 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +W+++ +++Liea e+ ++ ++g lk+++W+ev++++ r+ ++ ++ +qCk++++ ++k+yk++k+ ++ + s++++f++lea GSBRNA2T00034800001 75 CWSEEATKVLIEAWGERFSEPGKGTLKQQQWKEVAEVVnesRQCKYLKTDVQCKNRIDTVKKKYKQEKAKVASG--DGPSKWVFFKKLEA 162 7*************************************988888999*************************98..56668******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.6E-23 | 74 | 163 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0010029 | Biological Process | regulation of seed germination | ||||
GO:0010431 | Biological Process | seed maturation | ||||
GO:0048831 | Biological Process | regulation of shoot system development | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MEEEDETRSP KSPGDSLSPA PSSPPPILPT SDVTVASATK PPQSPSRNAL ALVVHTPSVV 60 GGSRNGRSGG GRDDCWSEEA TKVLIEAWGE RFSEPGKGTL KQQQWKEVAE VVNESRQCKY 120 LKTDVQCKNR IDTVKKKYKQ EKAKVASGDG PSKWVFFKKL EALIGAGGGK APMGRRQGNK 180 GTVLKRGSDS MKWHFRKRSA SETESESDPE PEASPPDSAE SLPPPPPSQL VSKRLKMDEL 240 GGSGVGDVAK AILGFTEAYE KAETAKLKLM LELEKERMKF VKEMELQRMQ FLKTQMEITQ 300 NHREEERSKP RINDDDDDRN VKNNGDNSDH HHAVAVVVVV VVMLSCLKQL ANKKTKL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 184 | 197 | KRGSDSMKWHFRKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.4362 | 0.0 | seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Induced by seed imbibition with a peak after 1 hour and then steadily decreases to be barely detectable at day 3. {ECO:0000269|PubMed:19155348}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that binds specific DNA sequence such as the GT-box-like motif 5'-CGTGATT-3' in the AT2S3 promoter. Negative regulator of seed maturation genes during seed germination and seedling development. May target GT-box-containing embryonic genes by competing with the binding of transcriptional activators to this promoter region (PubMed:19155348). Contributes to the maintenance and control of seed filling (PubMed:22231199) and may repress the maturation program during early embryogenesis (PubMed:21330492). {ECO:0000269|PubMed:19155348, ECO:0000269|PubMed:21330492, ECO:0000269|PubMed:22231199}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00034800001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352921 | 2e-90 | AK352921.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-08-P22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013588058.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL1-like | ||||
Swissprot | Q9SYG2 | 1e-137 | ASIL1_ARATH; Trihelix transcription factor ASIL1 | ||||
TrEMBL | A0A078GNF1 | 0.0 | A0A078GNF1_BRANA; BnaC06g10480D protein | ||||
TrEMBL | A0A0D3CSA3 | 0.0 | A0A0D3CSA3_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g050870.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8910 | 16 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54060.1 | 3e-85 | 6B-interacting protein 1-like 1 |
Publications ? help Back to Top | |||
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