 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
GSBRNA2T00034335001 |
| Common Name | GSBRNA2T00034335001, LOC106382814 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
SBP |
| Protein Properties |
Length: 309aa MW: 34416.3 Da PI: 9.2846 |
| Description |
SBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSBRNA2T00034335001 | genome | Genoscope | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SBP | 126.2 | 1.3e-39 | 59 | 136 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
+CqvegC++dls+ak+y++rhkvC +hsk+++v+vsgl+qrfCqqCsrfh+l efD ekrsCrrrLa hnerrrk+qa
GSBRNA2T00034335001 59 RCQVEGCKMDLSNAKTYYSRHKVCGIHSKSSKVTVSGLHQRFCQQCSRFHQLCEFDLEKRSCRRRLACHNERRRKPQA 136
6**************************************************************************986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 309 aa
Download sequence Send
to blast |
MELLMGSGQN RTETVGSSSR ESSSLSGGLR IGQKIYFEDG SGSGKDRANK YRKTTTGARC 60
QVEGCKMDLS NAKTYYSRHK VCGIHSKSSK VTVSGLHQRF CQQCSRFHQL CEFDLEKRSC 120
RRRLACHNER RRKPQATRAT LFTSGLSRIS PSLYGSVLGD PSWDRSVFSQ GSSRFSITYP 180
EMVNNSSTDS SCALSLLSNS NTTQQQQQQL QTSTNAYLMD AERVKMAQSP PVSVHNQYSN 240
QTWEFMSGEK SNSPCVSSPA LRLNQISEPD DELQFLTSNG ATMGGFELNL QQQVLRQYSS 300
TQHFTWPL*
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Weak increase of expression during floral induction. {ECO:0000269|PubMed:14573523}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Negatively regulated by microRNAs miR157. {ECO:0000305|PubMed:12202040}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC189469 | 0.0 | AC189469.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB078G17, complete sequence. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Chalhoub B, et al.
Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
Science, 2014. 345(6199): p. 950-3
[PMID:25146293] - Morea EG, et al.
Functional and evolutionary analyses of the miR156 and miR529 families in land plants.
BMC Plant Biol., 2016. 16: p. 40
[PMID:26841873] - Hyun Y, et al.
Multi-layered Regulation of SPL15 and Cooperation with SOC1 Integrate Endogenous Flowering Pathways at the Arabidopsis Shoot Meristem.
Dev. Cell, 2016. 37(3): p. 254-66
[PMID:27134142] - Xu M, et al.
Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
PLoS Genet., 2016. 12(8): p. e1006263
[PMID:27541584]
|
