PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00034114001
Common NameGSBRNA2T00034114001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 354aa    MW: 39816.6 Da    PI: 8.6509
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00034114001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.001693111220
                          EETTTTEEESSHHHHHHHH CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHi 20 
                           C  Cgk F+++  L  H+
  GSBRNA2T00034114001  93 YCRECGKGFPSSKALCGHM 111
                          5*****************9 PP
2zf-C2H212.20.00055296318123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+C ++F++   L  H r+H
  GSBRNA2T00034114001 296 HECPICFRVFKSGQALGGHKRSH 318
                          79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.56E-5535No hitNo description
Gene3DG3DSA:3.30.160.605.5E-4632IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.3E-4932IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.221936IPR007087Zinc finger, C2H2
SMARTSM003550.28931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.38892119IPR007087Zinc finger, C2H2
SMARTSM003550.04392114IPR015880Zinc finger, C2H2-like
PfamPF139129.4E-594116IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
PfamPF139122.6E-10296318IPR007087Zinc finger, C2H2
SMARTSM003550.14296318IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974296318IPR007087Zinc finger, C2H2
PROSITE patternPS000280298318IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEQCQERKFV CRFCSKRFPC GKSLGGHIRT HMNHENSADS DEDELNNLRV DENGGNSSYG  60
LRENPKKNKR FVVQRDRMAF KHQQHQHQQQ LLYCRECGKG FPSSKALCGH MACHSEREKI  120
VMDSQSETEA SSSPIRRRSK RVEMALSLMM MSRDSSFKKG HNMVVNSLAE SSDNYSVILE  180
TKSSSGEQLK KVDECCKKDN LGRVENGDVM YESDNSDSGY FRNGPKKLDS DVFVDDGFSN  240
KAAMGFNSSQ DKSLNRFKKE WSGTGSGRSA TNPPNNCISS ATSCLDRDAK KKSKGHECPI  300
CFRVFKSGQA LGGHKRSHFL GNHEHRTLVI QQQHQVAHEM HTLIDLNLPA PID*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00034114001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894291e-135AC189429.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB066M16, complete sequence.
GenBankHM5609661e-135HM560966.1 Brassica rapa subsp. chinensis C2H2 zinc finger transcription factor (MF20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110025.10.0PREDICTED: zinc finger protein ZAT9-like
RefseqXP_009110026.10.0PREDICTED: zinc finger protein ZAT9-like
RefseqXP_022545977.10.0zinc finger protein ZAT9-like
TrEMBLA0A078J9B00.0A0A078J9B0_BRANA; BnaA08g19810D protein
STRINGBra016280.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.11e-153C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]