PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00033516001 | ||||||||
Common Name | GSBRNA2T00033516001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 219aa MW: 24978 Da PI: 10.3639 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.5 | 2.4e-08 | 92 | 138 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h +Er RR++i + + L++l+P + s+ Ka L + ++Y++sL GSBRNA2T00033516001 92 SHRFAERVRREKISEMLTLLQDLVPDS----SRITGKAVSLDEIINYVQSL 138 7999**********************9....899***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.83E-13 | 86 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.122 | 88 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.1E-13 | 90 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.46E-9 | 92 | 143 | No hit | No description |
Pfam | PF00010 | 1.7E-5 | 92 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.7E-7 | 94 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MFFGQENQSR IPHPLTASRC RFSFHSPYET LRVKSSCLIH SIRPPPSPLC VFKAFFKLRG 60 GVVSGGIDDT KPPEPPKDYI HVRARRGQPA DSHRFAERVR REKISEMLTL LQDLVPDSSR 120 ITGKAVSLDE IINYVQSLKR QVELLYMKLA TINPRMESNR NAALSIKVKE NMLYAIACSE 180 QRLLLGYYSL AQNMPRFSDT QFLSKYGFVQ TKIWILGK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.28854 | 2e-41 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00033516001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC183493 | 1e-105 | AC183493.1 Brassica oleracea Contig B, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013714240.1 | 1e-100 | transcription factor bHLH77-like | ||||
Swissprot | Q9LK48 | 2e-67 | BH077_ARATH; Transcription factor bHLH77 | ||||
TrEMBL | A0A078GKV1 | 1e-161 | A0A078GKV1_BRANA; BnaC09g20010D protein | ||||
STRING | Bo1g019110.1 | 1e-132 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7406 | 20 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23690.1 | 8e-70 | bHLH family protein |
Publications ? help Back to Top | |||
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