PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00033513001
Common NameGSBRNA2T00033513001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 467aa    MW: 52436 Da    PI: 6.2091
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00033513001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA43.35e-14741135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C +C++t+TplWR+gp  ++ LCnaCG ++r kg+
  GSBRNA2T00033513001  7 CCHCRVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                         99**************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.0E-9155IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.52E-10546No hitNo description
CDDcd002028.01E-16663No hitNo description
PfamPF003208.9E-12741IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.884740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.6E-11741IPR013088Zinc finger, NHR/GATA-type
PfamPF139195.5E-10241332IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MGKQGPCCHC RVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHS RSEGDQIEIE  60
DHRVQKTMMI NKMSMNKKIL KRKSSHQENF TVKRTSFELN NGFKNEEASN RSSSGSVVSN  120
SESCDQSNAW ETTFPCKKRT CVVVGRPKAA SSVEKLTKDL FSILQEQQQS SCLSGCSEED  180
LLFENESPMV IGHGSVLMRD EESEASSLLV ESRKSVSVRS VEFEVNRVQR SLNLGGNDIK  240
QEQHKTKPQV LGRPSLPLCN IDLKDIFNFD EFMKKFTEEE QQKLMKLLPG VDSVDLPDSL  300
RSMFESSQFK DNFSLFQQLV ADGVFETLSS SSSSSKPEEF KRLAKLALSD PNKSHLLESY  360
CMLKEQRKGS EDSVTTSERP SESLSQNFSE TRGVMKSPKE VMKMRSKHNG TEEIVENSVS  420
SFNNHMRYGG PMVFSSEDND ICDEEDVLVD VPSNGSFPQA ELLHMI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00033513001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834930.0AC183493.1 Brassica oleracea Contig B, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610850.10.0PREDICTED: GATA transcription factor 27-like isoform X1
RefseqXP_013712804.10.0GATA transcription factor 27-like isoform X1
SwissprotQ5PP380.0GAT27_ARATH; GATA transcription factor 27
TrEMBLA0A078GMX90.0A0A078GMX9_BRANA; BnaC09g20040D protein
STRINGBo9g069320.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.10.0GATA transcription factor 27
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]