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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00033493001 | ||||||||
Common Name | GSBRNA2T00033493001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Trihelix | ||||||||
Protein Properties | Length: 492aa MW: 54144.8 Da PI: 9.8732 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 38.6 | 2.8e-12 | 400 | 444 | 24 | 68 |
trihelix 24 gklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 + ++k +W+ vs+++ erg+++sp+ ++k+++lnkr+kk++e++ GSBRNA2T00033493001 400 ALQRKIKWKFVSEVLFERGYHVSPQLSEDKFNDLNKRFKKLNENR 444 45999************************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 5.5E-7 | 400 | 443 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 492 aa Download sequence Send to blast |
MEGMTCSVVD LVCRRRLVLG SVAGVGYVGG RDSSSLLKPL QMIRRYHSGG EGFDLENDGA 60 WSPEEVTIPA VLHCLPSSLL FCGYVWGGSS LGVVARAYEL HVAASGEFLR LHPRLIGELR 120 LPESSSGLWQ RVGLSLSRNK GVIFGSVVSA KEVQSGGCGL GVYTVPGLGG LEAAISKSPS 180 RTTAPPIIGL LLVQPVCPQC FKDWVAFLSG SSRQPKAQSA HTSYLGRRRC ANFGSCLGLF 240 FFALNRSLLS SPFFQSNLPQ LPPSSSSTSQ KVRPVPAPPS LPPAVKRDLS MIMSNLKLVA 300 FRDWDLWEPR DSAGSVLRQG FCVSGNPERL RSTADSFVQS LEGEKDANFP QEGVVCGGAL 360 SYKSFNLQGS MRVHHHNPNS RPLEGDDLSM DGGSRRKFAA LQRKIKWKFV SEVLFERGYH 420 VSPQLSEDKF NDLNKRFKKL NENRFNMHHD LALQHSVKLA FRNIDDQEND DFRNHQLERR 480 TNRKKKTTSN I* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.12396 | 4e-35 | root| seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00033493001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A078GLD2 | 0.0 | A0A078GLD2_BRANA; BnaC09g20150D protein | ||||
STRING | Bo9g069480.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 4e-23 | sequence-specific DNA binding transcription factors |
Publications ? help Back to Top | |||
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