PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00032840001
Common NameGSBRNA2T00032840001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 237aa    MW: 26876.1 Da    PI: 5.4401
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00032840001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-2053102255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           ykGVr+++ +g+WvAeIr p++   r+r +lg+fgtaeeAa a+++a+ +++g
  GSBRNA2T00032840001  53 LYKGVRQRH-WGKWVAEIRLPKS---RTRLWLGTFGTAEEAALAYDQAAFQIRG 102
                          59******9.**********954...4***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.68E-3252111No hitNo description
Gene3DG3DSA:3.30.730.101.8E-3053111IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-2153111IPR016177DNA-binding domain
PROSITE profilePS5103221.98353110IPR001471AP2/ERF domain
SMARTSM003803.9E-3553116IPR001471AP2/ERF domain
PRINTSPR003672.1E-105465IPR001471AP2/ERF domain
PfamPF008476.0E-1554102IPR001471AP2/ERF domain
PRINTSPR003672.1E-107692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MESKPLGLNQ LTPYQTYQIQ KQLNHRRSTT STLSPNQILM KKLSPSSSNS QKLYKGVRQR  60
HWGKWVAEIR LPKSRTRLWL GTFGTAEEAA LAYDQAAFQI RGDIGKLNFP DIKHEEINSL  120
PSSVDAKLQA ICQSLRNTEE TCSVSEKSED MCSVSDKTEL FLTKTEHMEM KFSDDSPRTD  180
KNSLWDESKL ESSYSEQGIT FLEFSDSEFD EIGRFGLGKF PSVEIDWDAI SKLSES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2052110160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00032840001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013746921.11e-175ethylene-responsive transcription factor ERF056-like
SwissprotQ9SIE41e-118ERF56_ARATH; Ethylene-responsive transcription factor ERF056
TrEMBLA0A078GLV81e-174A0A078GLV8_BRANA; BnaA04g12700D protein
TrEMBLA0A3P6CJP41e-174A0A3P6CJP4_BRACM; Uncharacterized protein
STRINGBra030255.1-P1e-174(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22200.11e-110ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]