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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00031962001 | ||||||||
Common Name | GSBRNA2T00031962001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 353aa MW: 37980.5 Da PI: 9.1452 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.9 | 1.1e-10 | 293 | 338 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L++l+P+ +k s +++L +Av++Ik Lq GSBRNA2T00031962001 293 SIAERERRTRISGRLKKLQDLVPNM----DKQTSYSDMLDLAVQHIKGLQ 338 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.814 | 287 | 337 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.01E-13 | 290 | 345 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.29E-11 | 291 | 342 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.8E-11 | 292 | 342 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.4E-12 | 293 | 343 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.8E-8 | 293 | 338 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MYQSSSSTSS SSQRSSLPGG GGGGAGLIRY GSAPGSLLNS MVDEVIGGSN GRDFNYPPPD 60 NFLGDFFAGA DSSSLRSESM TCGVNSSDGQ KHLVNNNNNN SNKDLLLDRS YGGFNEISQH 120 KINNHVGGGG SSSGSYSLAR QRSSPADFFS YLSGEKNNFS SNQPTSDYNQ QGGSNAGRGP 180 SRLKSQLSFT SHDPLARISE VNETSVHYGS GHSFSAASFG AATDSWDDGS GSTGFTVTRP 240 TKRPKDMNSG LFSQYSLPSD TSMNYMDNYM QLPEDSVPCK VRAKRGFATH PRSIAERERR 300 TRISGRLKKL QDLVPNMDKQ TSYSDMLDLA VQHIKGLQHQ LQVPYKTINR LI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.8013 | 0.0 | bud| flower| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00031962001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF317549 | 0.0 | KF317549.1 Brassica oleracea var. capitata PA1 (PA1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013698351.1 | 0.0 | transcription factor bHLH128-like isoform X2 | ||||
Swissprot | Q8H102 | 1e-177 | BH128_ARATH; Transcription factor bHLH128 | ||||
TrEMBL | A0A078FAU6 | 0.0 | A0A078FAU6_BRANA; BnaC05g03920D protein | ||||
STRING | Bo5g006980.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11777 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05805.1 | 1e-156 | bHLH family protein |
Publications ? help Back to Top | |||
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