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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00031771001 | ||||||||
Common Name | GSBRNA2T00031771001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | DBB | ||||||||
Protein Properties | Length: 236aa MW: 26174.4 Da PI: 4.633 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.2 | 2.8e-07 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ +e+ +++ C ++ lC++C +e+H H+ GSBRNA2T00031771001 4 QCDVCENAPATVICCADEAALCPKCDVEIHAAnklaskHQ 43 7*****************************6566776766 PP | |||||||
2 | zf-B_box | 31 | 5.3e-10 | 55 | 95 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 ++C+ ++ek + +fC +++ llC+dC +++H H+ GSBRNA2T00031771001 55 PRCDICQEKAAFIFCVEDRALLCKDCDESIHLAnsrsanHQ 95 79*****************************4334556665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.172 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.59E-5 | 3 | 45 | No hit | No description |
SMART | SM00336 | 2.4E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.6E-5 | 4 | 44 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.883 | 52 | 99 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.3E-15 | 52 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.2E-7 | 55 | 95 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.01E-7 | 55 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MKIQCDVCEN APATVICCAD EAALCPKCDV EIHAANKLAS KHQRLHLDSL PTKFPRCDIC 60 QEKAAFIFCV EDRALLCKDC DESIHLANSR SANHQRLLAT GIKVALSSSS CSKETEKDHS 120 EEIPAKTLSQ KQPSSSATTP LPWAVDDLFH FSEFTDKKGE LDLGEFEWFS DMGFFGDQTL 180 PAAEVPELSV SHMGQVHSYR PMKSNVSYKK PRLEIRADDD DDDDDEEHFI VPDLG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.10174 | 1e-125 | leaf| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: High expression in leaves and lower in roots and flowers. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation (PubMed:17605755, PubMed:18540109, PubMed:21685177). BBX24/STO and BBX25/STH function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX24/STO acts additively with BBX25/STH during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). Functions as negative regulator of photomorphogenic UV-B responses by interacting with both COP1 and HY5 (PubMed:22410790). May act as a transcription factor in the salt-stress response (PubMed:12909688). {ECO:0000269|PubMed:12909688, ECO:0000269|PubMed:17605755, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:21685177, ECO:0000269|PubMed:22410790, ECO:0000269|PubMed:23624715}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00031771001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak before dawn. {ECO:0000269|PubMed:17605755}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN386973 | 1e-115 | JN386973.1 Brassica napus salt tolerance protein (STO-2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013600544.1 | 1e-164 | PREDICTED: B-box zinc finger protein 24-like isoform X2 | ||||
Swissprot | Q96288 | 1e-131 | BBX24_ARATH; B-box zinc finger protein 24 | ||||
TrEMBL | A0A078FAD4 | 1e-172 | A0A078FAD4_BRANA; BnaC08g44590D protein | ||||
STRING | Bo8g114810.1 | 1e-163 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2711 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06040.1 | 1e-130 | DBB family protein |
Publications ? help Back to Top | |||
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