PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00031269001 | ||||||||
Common Name | GSBRNA2T00031269001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 282aa MW: 31552.4 Da PI: 8.0362 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.9 | 4e-19 | 135 | 189 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Le+ F+++++++ +++ LAkklgLt rqV vWFqNrRa+ k GSBRNA2T00031269001 135 RKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTK 189 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 122 | 2.9e-39 | 135 | 224 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rlsk+q+++LE++F+e+++L+p++K +la++Lgl++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rLeke eLr + GSBRNA2T00031269001 135 RKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLEKEAVELR-A 223 69*************************************************************************************9.4 PP HD-ZIP_I/II 91 l 91 l GSBRNA2T00031269001 224 L 224 4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 5.5E-26 | 2 | 100 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 1.6E-18 | 116 | 189 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.19E-19 | 120 | 192 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.459 | 131 | 191 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.4E-17 | 133 | 195 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.6E-16 | 135 | 189 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.02E-16 | 135 | 192 | No hit | No description |
PRINTS | PR00031 | 7.4E-6 | 162 | 171 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 166 | 189 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.4E-6 | 171 | 187 | IPR000047 | Helix-turn-helix motif |
SMART | SM00340 | 4.4E-23 | 191 | 234 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 7.6E-8 | 191 | 225 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MMMGKEDLSL SLSLSLGFAQ THHPLKLNLN PTSSSISNLQ MFPWNQTFVS SSDHQNQQFF 60 TKIDVNSLPS TVHLEEETGF SSPNSTISST VSGKRRSERE GTSGGAGDDL DVTLDRSSSR 120 ETSDEEEEHG GEASRKKLRL SKDQSAVLED TFKEHNTLNP KQKLALAKKL GLTARQVEVW 180 FQNRRARTKL KQTEVDCEYL KRCVEKLTEE NRRLEKEAVE LRALKLSPRL YGHMSPPTTL 240 LMCPSCERVA GPSNHNQRSV SLSPWLQMAH GSTFDVVHPR S* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 139 | SRKKLRL |
2 | 183 | 191 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00031269001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022561703.1 | 0.0 | homeobox-leucine zipper protein HAT1-like | ||||
Swissprot | P46600 | 1e-180 | HAT1_ARATH; Homeobox-leucine zipper protein HAT1 | ||||
TrEMBL | A0A078F8H0 | 0.0 | A0A078F8H0_BRANA; BnaC07g34350D protein | ||||
TrEMBL | A0A3P6ER34 | 0.0 | A0A3P6ER34_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g105120.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1563 | 26 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17460.1 | 1e-142 | Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein |
Publications ? help Back to Top | |||
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