PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00031157001
Common NameGSBRNA2T00031157001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 414aa    MW: 44928.4 Da    PI: 5.4121
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00031157001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.64e-31209267259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs+fpr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  GSBRNA2T00031157001 209 SDLWAWRKYGQKPIKGSPFPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 267
                          699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.0E-31202269IPR003657WRKY domain
PROSITE profilePS5081132.879203269IPR003657WRKY domain
SuperFamilySSF1182903.27E-26206269IPR003657WRKY domain
SMARTSM007746.3E-38208268IPR003657WRKY domain
PfamPF031067.1E-26210267IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MCSVFEMDNY QGDLRDILRG IDGGHVLSRE LAPSPPRIWP LPQPSSSDLH PINPFGDPFV  60
SMTDPLLQEL NAVTNSGYFS TADNNNNNCF LVPKVLEDDH IKSQCSVFPR IRISHSNIIS  120
DSSPCNSPAM SAHVFAAAAA ASPRGVINVD TNSPRNCLLV DGNTFSSQIQ ISSPPNLGPK  180
RRQSQAKKVV CIPAPAAMNS RSSGEVVPSD LWAWRKYGQK PIKGSPFPRG YYRCSSSKGC  240
SARKQVERSR TDPNMLVITY TSEHNHPWPI QRNALAGSTR SSSNPNSSKS STATAPSNGP  300
PNNTHSPSSA SPSPLPASAV KDEQREEDME LENVENDYDN QFAPYRPELP DQHQPDDFFA  360
DLEELEEDSL SMFLSQGVAG YGSNKTTASN GISNFGGWSG ADNSNDDRDS RSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-25183269279Disease resistance protein RRS1
5w3x_D2e-25183269279Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00031157001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2283430.0AK228343.1 Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-76-G23.
GenBankAY0526460.0AY052646.1 Arabidopsis thaliana WRKY transcription factor 14 (WRKY14) mRNA, complete cds.
GenBankBT0064680.0BT006468.1 Arabidopsis thaliana At1g30650 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013705518.10.0probable WRKY transcription factor 14 isoform X1
SwissprotQ9SA800.0WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBLA0A078F8A60.0A0A078F8A6_BRANA; BnaC05g23680D protein
STRINGBo5g063280.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30852865
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.11e-174WRKY DNA-binding protein 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]