PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00030911001
Common NameGSBRNA2T00030911001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 378aa    MW: 41549.5 Da    PI: 9.3818
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00030911001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like841.6e-26184237155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k r++W+ eLH++Fv+a+++L G+ekA+Pk+ilelm+v++L++e+v+SHLQkYRl
  GSBRNA2T00030911001 184 KSRVVWSMELHQQFVKAINHL-GIEKAVPKRILELMSVPSLSRENVASHLQKYRL 237
                          68*******************.********************************8 PP
2Response_reg72.51.7e-24131211109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl+vdD+ + + +l+++l +  y +v+ +++++ al+ll+e++  +Dl+l D+ mpgm+G++ll++   e  +lp+i+++  g  +++  
  GSBRNA2T00030911001  13 VLVVDDDASCLIILEKMLLRLMY-QVTICSQADVALTLLRERKgcFDLVLSDVHMPGMNGYKLLQQVGLEM-DLPVIMMSVDGRTATVMT 100
                          89*********************.*******************************************6644.8***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           ++ Ga d+l Kp+ peel +
  GSBRNA2T00030911001 101 GINHGACDYLIKPIRPEELKN 121
                          ******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.2E-1381366IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23004.7E-4010152No hitNo description
SuperFamilySSF521723.7E-3410136IPR011006CheY-like superfamily
SMARTSM004487.1E-2911123IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.24612127IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.7E-2113121IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.68E-2714126No hitNo description
PROSITE profilePS512949.141181240IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-27181242IPR009057Homeodomain-like
SuperFamilySSF466891.74E-18182241IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-24184237IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MTISDQFPCG LRVLVVDDDA SCLIILEKML LRLMYQVTIC SQADVALTLL RERKGCFDLV  60
LSDVHMPGMN GYKLLQQVGL EMDLPVIMMS VDGRTATVMT GINHGACDYL IKPIRPEELK  120
NIWQHVVRRK CTINKNSISS SSSSLGSLFS VSGVSEGSLK RRKNKRRVDS EEDDLLDPGN  180
SSKKSRVVWS MELHQQFVKA INHLGIEKAV PKRILELMSV PSLSRENVAS HLQKYRLYLK  240
RLSGAASQSR DAESMERYEN IQAMVSSGQI HPQALAALYG RPIDNHMSGG FGVWIPTDNH  300
LGGSNVSSAS NRCFGALDSP SSVAASMSVH GLSSSGNVRQ QGNGFSNNTD YRIRQGNGSG  360
ISEESWILGR PLRQRKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-21181243264ARR10-B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in young leaf tissue. {ECO:0000269|PubMed:15173562}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00030911001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532221e-122AK353222.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-38-P04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129204.10.0PREDICTED: two-component response regulator ARR14 isoform X1
SwissprotQ8L9Y31e-179ARR14_ARATH; Two-component response regulator ARR14
TrEMBLA0A078F8S30.0A0A078F8S3_BRANA; Two-component response regulator
STRINGBra026635.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81502736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.11e-175response regulator 14
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]