PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00030829001

Common Name

GSBRNA2T00030829001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ZF-HD

Protein Properties

Length: 299aa MW: 34071.9 Da PI: 8.4301

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00030829001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	99.3	2.7e-31	83	137	4	59
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +YkeClkNhAas+Ggha+DGCgEfmps geeg+++al+C+AC CHRnFHRre e GSBRNA2T00030829001 83 NKYKECLKNHAASTGGHAIDGCGEFMPS-GEEGSIEALTCSACHCHRNFHRREIEG 137 58***********************9.999*******************886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	5.7E-29	84	135	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	7.4E-31	84	135	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-23	84	145	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	28.051	85	134	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	9.36E-19	197	270	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.8E-29	203	271	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	6.2E-27	209	265	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MEVASQEEHD MPIPINTTHG GHGHMIHRHH DHRHHNPANS THPNQLMVLS NGNGFGQNHD 60 DPDHHNVGYN IMISNNKEKH VVNKYKECLK NHAASTGGHA IDGCGEFMPS GEEGSIEALT 120 CSACHCHRNF HRREIEGEDK TYFSPYHHNQ PQRNPMFHHH HKMTRSPLPQ QMIMPLGVAT 180 TTVSNSESEE DIPFQQPPPP YNHGGHNQKK RLRTKFTQEQ KEKMLSFAER IGWKMQRQEE 240 SVVQKFCQEI GVRRRVLKVW IHNNKHNLSK KSNNNNVEIS ASNNDINKAL TGNRASSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh5_A	1e-23	209	267	17	75	ZF-HD homeobox family protein
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00258	DAP	Transfer from AT2G02540	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00030829001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013618278.1	0.0	PREDICTED: zinc-finger homeodomain protein 3 isoform X1
Refseq	XP_013618279.1	0.0	PREDICTED: zinc-finger homeodomain protein 3 isoform X2
Refseq	XP_013674652.1	0.0	zinc-finger homeodomain protein 3-like
Swissprot	O64722	1e-125	ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBL	A0A078FBQ6	0.0	A0A078FBQ6_BRANA; BnaA02g26470D protein
STRING	Bo2g136360.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3339	26	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	1e-110	homeobox protein 21

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]