PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00030633001

Common Name

GSBRNA2T00030633001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 299aa MW: 34749.5 Da PI: 5.4923

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00030633001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	39.9	1.2e-12	20	132	10	128
NAM 10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 +de +++ yL+ ++ + e+++++ d+++ +P++ ++e+ + F+ ++ +a r+ sg W+ g+dk ++++ +g+ GSBRNA2T00030633001 20 NDEKMMSIYLQSINDNGDSWPEQFMEDGDVFTKNPSEVF----ESENPFFVFVYPRT-EAC-GRTDG-CGSGGWRIIGHDKLIKHEdTGK 102 6999*****9999988666688**********5....23344444444433.333.46665.47899*******997788 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 g kk+L f +++ +g k +Wvm++yrl GSBRNA2T00030633001 103 ILGFKKILKFCGETKARGYKRTWVMKQYRL 132 89*****99*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	20.713	11	150	IPR003441	NAC domain
Pfam	PF02365	2.1E-6	20	132	IPR003441	NAC domain
SuperFamily	SSF101941	1.31E-22	20	148	IPR003441	NAC domain
PROSITE profile	PS51005	7.137	145	296	IPR003441	NAC domain
SuperFamily	SSF101941	6.93E-13	191	294	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MEEIRAANYP DIKDDYSKAN DEKMMSIYLQ SINDNGDSWP EQFMEDGDVF TKNPSEVFES 60 ENPFFVFVYP RTEACGRTDG CGSGGWRIIG HDKLIKHEDT GKILGFKKIL KFCGETKARG 120 YKRTWVMKQY RLPSKWNPKQ DHVVCKIQLL FQTEISFLLA KHFSCSSDPL PATQSLTAYG 180 IRLANPQDDG AYYLQVIFDS GGNEWPCYVT NDVYCVHPST LVDHEDKRIM EEDNPIFSMS 240 REVMGYKRVF KFYEEDKGRY FDIVDGEQVL RTWIMEEYRL VEEAMKDKVL CVIKRGRR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00030633001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013728371.1	0.0	uncharacterized protein LOC106432073
TrEMBL	A0A078JAX7	0.0	A0A078JAX7_BRANA; BnaC01g43190D protein
STRING	Bo1g091580.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3704	14	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G60300.1	1e-106	NAC family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]