PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00030135001
Common NameGSBRNA2T00030135001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 434aa    MW: 48946.8 Da    PI: 10.4933
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00030135001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.12.1e-20116206698
                          ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                   B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                          ++s++l+++r+ l k+f++++g+ k    ++ ++++sg+sW + l+++k+ g+ ++++GW++F++an+Lk+g f  F+l++ +++++ +k
  GSBRNA2T00030135001 116 VTSSNLRLNRVALTKSFTKANGLHKSW-CEINVMNQSGKSWVMGLRHNKGTGQDYMRGGWRSFCRANKLKTGSFYRFELVR-TGTRPALK 203
                          689******************988754.59*****************999999999***********************98.78889999 PP

                          EE- CS
                   B3  96 vfr 98 
                          +++
  GSBRNA2T00030135001 204 LCS 206
                          987 PP
2B355.69.9e-18237333199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f +v++++++lks++l + ++fa+e+g+kk +  ++ l d++g +W   +      g+++l+kGW +F++a g+++g+++++k+++++++
  GSBRNA2T00030135001 237 FMTVTLKPYMLKSRQLHFQNSFARENGIKKGG--KINLVDKNGGRWPSCVASGYVNGGFYLAKGWISFCEASGINTGETFTLKFVREKGK 324
                          7789999*******************999655..8***************77666667***************************99*** PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                          ++++++f+k
  GSBRNA2T00030135001 325 TPMLQFFSK 333
                          *****9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-9689IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-9689IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.333894IPR003340B3 DNA binding domain
CDDcd100173.63E-71089No hitNo description
SMARTSM010194.1E-71195IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-20104206IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-17106206IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.619111208IPR003340B3 DNA binding domain
SMARTSM010196.3E-24111208IPR003340B3 DNA binding domain
PfamPF023627.0E-19116206IPR003340B3 DNA binding domain
CDDcd100173.04E-17118206No hitNo description
Gene3DG3DSA:2.40.330.101.9E-14231325IPR015300DNA-binding pseudobarrel domain
CDDcd100171.27E-10235332No hitNo description
SuperFamilySSF1019369.42E-15236332IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-16237333IPR003340B3 DNA binding domain
PROSITE profilePS5086312.266237333IPR003340B3 DNA binding domain
SMARTSM010197.6E-19237334IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MATSPKSNAP FFVISLAGHN SSPLIPEAFF ATKNKSTKLK LTSDACDTTW QVKLNGRGFA  60
DGWEDFSNAH CLRNDDVLLF REDGEMIFHT WDKVSDLRTR IKAESSSTEN SCILGVTSSN  120
LRLNRVALTK SFTKANGLHK SWCEINVMNQ SGKSWVMGLR HNKGTGQDYM RGGWRSFCRA  180
NKLKTGSFYR FELVRTGTRP ALKLCSDNTP QRKCSKAKVS TNPNREGERS SMNRRKFMTV  240
TLKPYMLKSR QLHFQNSFAR ENGIKKGGKI NLVDKNGGRW PSCVASGYVN GGFYLAKGWI  300
SFCEASGINT GETFTLKFVR EKGKTPMLQF FSKAKTKVNT ETRFQKKARV SVEGEPSRRT  360
QASHKSTVDT NNVECKQPLE TIYHQVRQSI VNVLADVRRF LSELEIKEQN LEAVLEEFDA  420
LGEKVSEVNK FFK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.113951e-90seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00030135001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892170.0AC189217.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010F06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013666957.10.0B3 domain-containing protein REM3-like
SwissprotQ8VZQ91e-160REM3_ARATH; B3 domain-containing protein REM3
TrEMBLA0A078J7970.0A0A078J797_BRANA; BnaA01g34850D protein
STRINGBra011286.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96581537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31620.11e-155B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]