PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00030133001
Common NameGSBRNA2T00030133001, LOC106371441
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 477aa    MW: 53525.5 Da    PI: 4.7242
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00030133001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.53.7e-1122891697
                         EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                         l+l  +f+++h ++      l   d s ++W+vkl  ++++    l++GW+eF+  n   +gD++ F+++g++ f  +v v 
  GSBRNA2T00030133001 22 LTLDTEFLRNHTKV------LLTSDASDKTWKVKL--DGNR----LAGGWEEFAAVNSFSDGDVLAFRHNGDEIF--HVAVS 89
                         66777777777544......55577999*******..9999....***********************9998888..77665 PP
2B359.46.3e-19141237299
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                          + + +++++l  +rl ++ +f     +k++++ ++ l +e+gr+W++ l+ + +sg++ +++GW +F++angL +gD++ Fkl++ s+++
  GSBRNA2T00030133001 141 LRASVTPSSLIDDRLDFSEDFKVMSFNKQTKPCEIYLVNEKGRKWTLILSRNISSGAFNIRRGWANFCSANGLSQGDICNFKLSE-SGER 229
                          5566778888888899999995555556678889****************9*******************************976.8888 PP

                          .EEEEE-S CS
                   B3  92 lvvkvfrk 99 
                          +v+ ++++
  GSBRNA2T00030133001 230 PVLLLCSH 237
                          99999987 PP
3B366.15e-21283376599
                          -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                   B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                          + +++ +k+g+l+++  f++e g++  +s+++tl +++gr+W+ +l +  +++ ++++++kGW+e++kang++++D++v++l+  +++++
  GSBRNA2T00030133001 283 EFTPNRFKTGQLTISSVFLRESGIN--KSMEITLLNKDGRKWSSYLHMsgQRGCEMFYMRKGWREMCKANGVEVNDSFVLELIC-EDANP 369
                          568999****************999..799****************7777888889**************************99.88889 PP

                          EEEEE-S CS
                   B3  93 vvkvfrk 99 
                           +k+++k
  GSBRNA2T00030133001 370 IFKFHSK 376
                          9998775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.039192IPR003340B3 DNA binding domain
SMARTSM010191.3E-81092IPR003340B3 DNA binding domain
CDDcd100171.40E-62288No hitNo description
Gene3DG3DSA:2.40.330.106.0E-113089IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-103289IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.92E-16138236IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.931140237IPR003340B3 DNA binding domain
SMARTSM010197.4E-19140238IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.7E-15140236IPR015300DNA-binding pseudobarrel domain
CDDcd100172.27E-15140236No hitNo description
PfamPF023625.4E-16141237IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-16275375IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.632279377IPR003340B3 DNA binding domain
SMARTSM010191.2E-17279377IPR003340B3 DNA binding domain
PfamPF023623.0E-21282376IPR003340B3 DNA binding domain
SuperFamilySSF1019369.42E-16286378IPR015300DNA-binding pseudobarrel domain
CDDcd100179.90E-14290375No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MVVPPKPSLF HWRFLTGGKP LLTLDTEFLR NHTKVLLTSD ASDKTWKVKL DGNRLAGGWE  60
EFAAVNSFSD GDVLAFRHNG DEIFHVAVSS ESDDNESDDT DDSESDESDD VEDEDNDEGD  120
ILVEKNKKPE ADSSSCDSCF LRASVTPSSL IDDRLDFSED FKVMSFNKQT KPCEIYLVNE  180
KGRKWTLILS RNISSGAFNI RRGWANFCSA NGLSQGDICN FKLSESGERP VLLLCSHESG  240
NGHEDKEEEE EEEECPEADA VKICSVGGCS KEKNTTSRLL TSEFTPNRFK TGQLTISSVF  300
LRESGINKSM EITLLNKDGR KWSSYLHMSG QRGCEMFYMR KGWREMCKAN GVEVNDSFVL  360
ELICEDANPI FKFHSKIENK EKGNTVEKTP EVSKRGHARV LNRSNSNLKR KQPESCSVSD  420
QVANVKQSIL DTLNTIRHFR AELETRENNL EASLQEVDDL GERILGISKI LNNNLV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in the reproductive meristem. {ECO:0000269|PubMed:10092172}.
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in flower development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00030133001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892170.0AC189217.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010F06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013666967.10.0B3 domain-containing protein REM1
SwissprotO650980.0REM1_BRAOB; B3 domain-containing protein REM1
TrEMBLA0A078JAE60.0A0A078JAE6_BRANA; BnaA01g34830D protein
STRINGBo1g011140.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99501736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31610.11e-158B3 family protein
Publications ? help Back to Top
  1. Franco-Zorrilla JM, et al.
    Identification of genes specifically expressed in cauliflower reproductive meristems. Molecular characterization of BoREM1.
    Plant Mol. Biol., 1999. 39(3): p. 427-36
    [PMID:10092172]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]