PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00029369001

Common Name

GSBRNA2T00029369001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 375aa MW: 40846.9 Da PI: 6.6172

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00029369001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.3	1e-06	270	308	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++++ + L++l+ + +K + a++L++A+eYIk L GSBRNA2T00029369001 270 VRKENLRDQITSLQQLVSPF-----GKTDTASVLQEAIEYIKFL 308 5778999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.782	259	308	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0071	269	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.34E-6	269	312	No hit	No description
SuperFamily	SSF47459	1.7E-11	269	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.5E-9	273	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MGDEFQATAA ICGSGGGAWW SSPRSVMSPS DHFLSPCFGA TITSDDFGCQ ENNIKSRNTC 60 KDNNIISGQR EADSDSGGST VTIDSTLQMM GLGFSSNSSS DWNHTILQED LNSSFLRSSQ 120 DHGQGFLSTT ASPYLLNPAC SSSSSTSSSS SLLRTFYDPE PNPYSFVSTT SCSLNNLHAS 180 WANNNINPNI NSFSANTNSL PFWNSSLTTN LNNTTQNSYV TTPLIIPPRG DDKTKKTRGQ 240 SESLKRGKYN EPASKKQRVT TPSPLPNFKV RKENLRDQIT SLQQLVSPFG KTDTASVLQE 300 AIEYIKFLHD QVTVLSTPYM KQGAPIHQQQ QDGNGNQELR AHGLCLVPIS STFPVANETT 360 ADFWTPTFGR NNFR*

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MGDEFQATAA ICGSGGGAWW SSPRSVMSPS DHFLSPCFGA TITSDDFGCQ ENNIKSRNTC  60
KDNNIISGQR EADSDSGGST VTIDSTLQMM GLGFSSNSSS DWNHTILQED LNSSFLRSSQ  120
DHGQGFLSTT ASPYLLNPAC SSSSSTSSSS SLLRTFYDPE PNPYSFVSTT SCSLNNLHAS  180
WANNNINPNI NSFSANTNSL PFWNSSLTTN LNNTTQNSYV TTPLIIPPRG DDKTKKTRGQ  240
SESLKRGKYN EPASKKQRVT TPSPLPNFKV RKENLRDQIT SLQQLVSPFG KTDTASVLQE  300
AIEYIKFLHD QVTVLSTPYM KQGAPIHQQQ QDGNGNQELR AHGLCLVPIS STFPVANETT  360
ADFWTPTFGR NNFR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.19678	1e-102	leaf\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00029369001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF380649	1e-124	AF380649.1 Arabidopsis thaliana At1g61660/T13M11_21 mRNA, complete cds.
GenBank	AY085602	1e-124	AY085602.1 Arabidopsis thaliana clone 159557 mRNA, complete sequence.
GenBank	AY113072	1e-124	AY113072.1 Arabidopsis thaliana At1g61660/T13M11_21 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013602811.1	0.0	PREDICTED: transcription factor bHLH112-like isoform X1
Refseq	XP_013672354.1	0.0	transcription factor bHLH112-like isoform X1
Swissprot	Q94JL3	0.0	BH112_ARATH; Transcription factor bHLH112
TrEMBL	A0A078GJC6	0.0	A0A078GJC6_BRANA; BnaC01g29610D protein
STRING	Bo1g098400.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8062	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Chen HC, et al. The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis. Plant Mol. Biol., 2017. 94(4-5): p. 531-548 [PMID:28631168]