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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00029048001 | ||||||||
Common Name | GSBRNA2T00029048001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 137aa MW: 16087.2 Da PI: 6.3515 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.3 | 3.5e-05 | 44 | 70 | 12 | 41 |
HHHHHHHHHHHHHCTSCCC...TTS-STCH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKa 41 RR++iN+++ L el+P + +++ ls a GSBRNA2T00029048001 44 RREKINTRIKLLHELVPGC---DKQWLSRA 70 9****************98...66656665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.9E-4 | 44 | 64 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MLTPKNAGGF TSLLEPPPTQ AVYLLHFTDL RNRFRYLHRR FTARREKINT RIKLLHELVP 60 GCDKQWLSRA ANVFAGDFKG DGADDAEEEN NDFFYDSETD HVHYVIKILF FLLYFQASIG 120 IFFMRFSEFR DFYDSE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00029048001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189520 | 4e-34 | AC189520.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091J13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A078GIE2 | 2e-96 | A0A078GIE2_BRANA; BnaC07g03660D protein | ||||
STRING | Bo7g011500.1 | 3e-72 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42300.2 | 4e-08 | bHLH family protein |
Publications ? help Back to Top | |||
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