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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00028935001 | ||||||||
Common Name | GSBRNA2T00028935001, LOC106433925 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 327aa MW: 37301.9 Da PI: 6.245 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.4 | 2e-51 | 11 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatg 87 +ppGfrFhPt+eel+ +yL+kk+++ k++l +vi++vd++k+ePwd+++ k+ + +++wyfFs++dkky+tg+r+nrat+ g+Wkatg GSBRNA2T00028935001 11 VPPGFRFHPTEEELLEYYLRKKISNIKIDL-DVIRDVDLNKLEPWDIQEmcKIGTtPQNDWYFFSHKDKKYPTGTRTNRATTVGFWKATG 99 69****************************.9***************962433332455******************************* PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +dk ++s +g +g++ktLvfykgrap+g+k+dW+mheyrl GSBRNA2T00028935001 100 RDKIIYS-NGDRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 139 *******.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-57 | 8 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.156 | 11 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-27 | 12 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MNISVNGQSQ VPPGFRFHPT EEELLEYYLR KKISNIKIDL DVIRDVDLNK LEPWDIQEMC 60 KIGTTPQNDW YFFSHKDKKY PTGTRTNRAT TVGFWKATGR DKIIYSNGDR IGMRKTLVFY 120 KGRAPHGQKS DWIMHEYRLD ENVLASSSNH DDEVSVETCE VIGADEGWVV CRVFMKKSLC 180 KTVISSPPRS VKTSSFNEKT IEEIFKVMGQ SSKEEIIVDP FLKLPNLECP NNTVSSYQRL 240 MDDQVHNYHV PSFGTSWATL DRLEASHLNG PNSYSIPAVD AIPQSPLHGL NRSGFYNTGL 300 TEDYYTTEMD IWNNTDFGRT TMSSNP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-47 | 8 | 178 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-47 | 8 | 178 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-47 | 8 | 178 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-47 | 8 | 178 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-47 | 8 | 178 | 17 | 170 | NAC domain-containing protein 19 |
3swm_B | 2e-47 | 8 | 178 | 17 | 170 | NAC domain-containing protein 19 |
3swm_C | 2e-47 | 8 | 178 | 17 | 170 | NAC domain-containing protein 19 |
3swm_D | 2e-47 | 8 | 178 | 17 | 170 | NAC domain-containing protein 19 |
3swp_A | 2e-47 | 8 | 178 | 17 | 170 | NAC domain-containing protein 19 |
3swp_B | 2e-47 | 8 | 178 | 17 | 170 | NAC domain-containing protein 19 |
3swp_C | 2e-47 | 8 | 178 | 17 | 170 | NAC domain-containing protein 19 |
3swp_D | 2e-47 | 8 | 178 | 17 | 170 | NAC domain-containing protein 19 |
4dul_A | 2e-47 | 8 | 178 | 14 | 167 | NAC domain-containing protein 19 |
4dul_B | 2e-47 | 8 | 178 | 14 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in anthers. Also present in pollen, base of siliques and inflorescence stems. {ECO:0000269|PubMed:16214898}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues such as tracheary elements. {ECO:0000269|PubMed:16214898}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00028935001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013730214.1 | 0.0 | NAC domain-containing protein 66 isoform X1 | ||||
Swissprot | Q9M274 | 0.0 | NAC66_ARATH; NAC domain-containing protein 66 | ||||
TrEMBL | A0A078GIT8 | 0.0 | A0A078GIT8_BRANA; BnaC06g18290D protein | ||||
STRING | Bo6g079180.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM778 | 28 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61910.1 | 0.0 | NAC domain protein 66 |
Link Out ? help Back to Top | |
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Entrez Gene | 106433925 |
Publications ? help Back to Top | |||
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