PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00028881001

Common Name

GSBRNA2T00028881001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 264aa MW: 29282.5 Da PI: 4.5209

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00028881001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	36.1	8.5e-12	16	55	4	43
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 e k +r v +skRr++++ K EL+ L +a++av + s+ GSBRNA2T00028881001 16 ETKEQRAVAYSKRRKTLFSKSAELCCLSGANIAVFVTSPG 55 77899*******************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.5E-17	5	64	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	13.624	5	65	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.64E-21	6	73	No hit	No description
PRINTS	PR00404	4.2E-6	7	27	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.58E-16	7	96	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.4E-11	16	58	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.2E-6	27	42	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.2E-6	42	63	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MARGGTKRKI EIKKRETKEQ RAVAYSKRRK TLFSKSAELC CLSGANIAVF VTSPGDKPNV 60 ASSFSGHASA SEIVDCYFNG TLPPKISVPE SKSGFWWTDP DLYSSCDDLS QLDVIEDLIK 120 RTKKDLMDCL EKQEKSRVCC FDSHQNPNSS SQAVTMYQNT SKPLDGSSQV IYGGESSSGQ 180 SRYLVNKDVG NCLWETKKEN NLIMSVPQER EQTQSIINVD GGDEGQSFWD ELYNEDMFGL 240 NNGEDDVMID IGEFLNEIES GES*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	12	29	KKRETKEQRAVAYSKRRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00028881001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018512013.1	0.0	PREDICTED: uncharacterized protein LOC103854647
TrEMBL	A0A398AGB1	0.0	A0A398AGB1_BRACM; Uncharacterized protein
STRING	Bra020600.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6395	14	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G48150.1	1e-68	M-type_MADS family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]