PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00028796001
Common NameGSBRNA2T00028796001, LOC106380006, WRKY50
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 170aa    MW: 18984 Da    PI: 7.0566
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00028796001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1001.4e-31108166159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDg++WrKYG+K+vk+s++pr+YY+C+   Cpvkk+ver+++dp++v++tYeg+Hnh+
  GSBRNA2T00028796001 108 LDDGFKWRKYGKKMVKNSPHPRNYYKCAADACPVKKRVERDKDDPSFVITTYEGSHNHS 166
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.1E-3394167IPR003657WRKY domain
SuperFamilySSF1182908.89E-28101166IPR003657WRKY domain
PROSITE profilePS5081129.046103168IPR003657WRKY domain
SMARTSM007745.5E-36108167IPR003657WRKY domain
PfamPF031062.0E-25109165IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MNDEETNLAR SFSDDTHSGL GLPDLYLTDE WMDDDLVSAV SGMNHSYGYQ TNVDAVFFSG  60
SSSSFIQPTS PSTKASVASA SAETQVKKEK KKVKERVAFK TRSDVEVLDD GFKWRKYGKK  120
MVKNSPHPRN YYKCAADACP VKKRVERDKD DPSFVITTYE GSHNHSSMY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-2598165774Probable WRKY transcription factor 4
2lex_A1e-2598165774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00028796001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0121700.0FJ012170.1 Brassica napus WRKY50 transcription factor (WRKY50) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619421.11e-124PREDICTED: probable WRKY transcription factor 50
RefseqXP_013675292.11e-124probable WRKY transcription factor 50
SwissprotQ8VWQ53e-87WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBLA0A0D3AXG01e-123A0A0D3AXG0_BRAOL; Uncharacterized protein
TrEMBLC4N1L71e-123C4N1L7_BRANA; BnaC02g40180D protein
STRINGBo2g155960.11e-123(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61212747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.17e-83WRKY DNA-binding protein 50
Publications ? help Back to Top
  1. Yang B,Jiang Y,Rahman MH,Deyholos MK,Kav NN
    Identification and expression analysis of WRKY transcription factor genes in canola (Brassica napus L.) in response to fungal pathogens and hormone treatments.
    BMC Plant Biol., 2009. 9: p. 68
    [PMID:19493335]
  2. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]