PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00028712001
Common NameGSBRNA2T00028712001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 241aa    MW: 26666 Da    PI: 7.8454
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00028712001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72.1e-1359105354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r+h+ +E+rRRdriNs ++ Lr+l+P +      Kl+Ka+ L +++e +k+L
  GSBRNA2T00028712001  59 RSHSLAEKRRRDRINSHLSALRKLVPDS-----DKLDKAALLARVIEQVKEL 105
                          68*************************8.....7*************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-1453111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.56756105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-1159105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.54E-1359108No hitNo description
Gene3DG3DSA:4.10.280.101.2E-1459110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.4E-1362111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MENSYDSAAA AKWFDSTSPY NMVSWSLQPG SSDSDLSRFN LGSSDELVGG KDRAESVSRS  60
HSLAEKRRRD RINSHLSALR KLVPDSDKLD KAALLARVIE QVKELKQEAK ESPIFQDLPT  120
EADEVTVLPE TISNELNQDT TIFKASFCCP DQTEAISEIV SVLTKFKLET IQAEFICVGG  180
RIRINFIVKE TATTTSAKAL KQSLCAALNR ITSLTSSSTS SVCRIRSKRQ RWFLSSNYSQ  240
*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00028712001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626148.11e-175PREDICTED: transcription factor bHLH51
RefseqXP_013646274.11e-175transcription factor bHLH51-like
RefseqXP_013716972.11e-175transcription factor bHLH51-like
SwissprotQ9XEF01e-116BH051_ARATH; Transcription factor bHLH51
TrEMBLA0A078GHS31e-174A0A078GHS3_BRANA; BnaC03g22510D protein
STRINGBo3g034790.11e-174(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68062542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.11e-117bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]