PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00028475001 | ||||||||
Common Name | GSBRNA2T00028475001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 293aa MW: 33300.9 Da PI: 10.0413 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95.4 | 2.5e-30 | 65 | 114 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+EL vLCdaeva+i+fs++g+lyey+ GSBRNA2T00028475001 65 KRIENSTNRQVTFCKRRNGLLKKAYELAVLCDAEVALIVFSTRGRLYEYA 114 79***********************************************8 PP | |||||||
2 | K-box | 76.5 | 6.8e-26 | 133 | 234 | 4 | 100 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqR..hllG...edLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 +++ s++e +a+++qqe+akL+++i+++q+++R + G ++L+ L++keL+q+e++Lek++++iRskK+elll++ie+l k+e +l+ GSBRNA2T00028475001 133 ANTHSVQEINAAYYQQESAKLRQQIQTIQNSNRlaAFSGifiNSLSALNVKELKQVENRLEKAISRIRSKKHELLLAEIENLHKREIKLD 222 455569999********************8888334456555799999****************************************** PP K-box 89 eenkaLrkklee 100 +e +Lr+k++e GSBRNA2T00028475001 223 NESIYLRTKIAE 234 *********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.347 | 57 | 117 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.1E-40 | 57 | 116 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-32 | 58 | 139 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.74E-41 | 58 | 131 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 59 | 113 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-32 | 59 | 79 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.8E-26 | 66 | 113 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-32 | 79 | 94 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-32 | 94 | 115 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.4E-18 | 142 | 232 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.191 | 143 | 238 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MRSNRTIMGE GEWQFRTTKN RFHVITGENT VVRKVTTTAP CNYYGFKEAL HILCTLIGRG 60 KIEIKRIENS TNRQVTFCKR RNGLLKKAYE LAVLCDAEVA LIVFSTRGRL YEYANDNIRA 120 TFERYKNSSS GNANTHSVQE INAAYYQQES AKLRQQIQTI QNSNRLAAFS GIFINSLSAL 180 NVKELKQVEN RLEKAISRIR SKKHELLLAE IENLHKREIK LDNESIYLRT KIAEVERFQQ 240 HHHQMVSGTE MTAIEALASR NYFAHNIMTI GSGSGAGHGC SYSDPDKKTH LG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-19 | 57 | 142 | 1 | 89 | MEF2C |
5f28_B | 1e-19 | 57 | 142 | 1 | 89 | MEF2C |
5f28_C | 1e-19 | 57 | 142 | 1 | 89 | MEF2C |
5f28_D | 1e-19 | 57 | 142 | 1 | 89 | MEF2C |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.6137 | 1e-153 | seed |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (Probable). Is required, together with TT16/AGL32 for the maternal control of endothelium formation, which is essential for female gametophyte development and fertilization, and seed formation (PubMed:22176531). {ECO:0000269|PubMed:22176531, ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00028475001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF856616 | 1e-145 | KF856616.1 UNVERIFIED: Brassica oleracea var. viridis MADS box protein-like (AGL11) mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013626799.1 | 1e-162 | PREDICTED: agamous-like MADS-box protein AGL11 | ||||
Swissprot | Q38836 | 1e-126 | AGL11_ARATH; Agamous-like MADS-box protein AGL11 | ||||
TrEMBL | A0A078J347 | 0.0 | A0A078J347_BRANA; BnaC03g72890D protein | ||||
STRING | Bra000696.1-P | 1e-155 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4994 | 22 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.1 | 1e-129 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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