PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00028419001
Common NameGSBRNA2T00028419001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 203aa    MW: 22316.2 Da    PI: 7.0513
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00028419001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.97.6e-2090124135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++C tt+TplWR+gp g+k+LCnaCG++++k+++
  GSBRNA2T00028419001  90 CASCDTTSTPLWRNGPKGPKSLCNACGIRFKKEER 124
                          ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.5E-1984136IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.46884120IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.28E-1384123No hitNo description
Gene3DG3DSA:3.30.50.106.2E-1788124IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.74E-1489121No hitNo description
PROSITE patternPS00344090115IPR000679Zinc finger, GATA-type
PfamPF003201.7E-1790124IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MMGYQTNANF SMLYDQDHPH NYDYDDLSSS TSVDCTLSLG TPSTRLDEHH RFSSANSNNI  60
SGDFFFHGGS AKTTTSYKKS GSEHNLPRRC ASCDTTSTPL WRNGPKGPKS LCNACGIRFK  120
KEERRAAARN SITSGGGSSV AEVPAENLYN GGGNYYTHHH YASSSPSWAH QNTQRVQYFS  180
PAPEMEYPFV DDVTAASFLS WN*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00110ampDAPTransfer from AT2G18380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00028419001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022559783.11e-151GATA transcription factor 20-like
SwissprotQ9ZPX01e-109GAT20_ARATH; GATA transcription factor 20
TrEMBLA0A078J6I91e-150A0A078J6I9_BRANA; BnaA09g52870D protein
STRINGBo9g026020.11e-135(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61591746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.11e-106GATA transcription factor 20
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]