PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00028252001
Common NameGSBRNA2T00028252001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 424aa    MW: 48182.4 Da    PI: 6.4578
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00028252001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.33.7e-22110214186
             trihelix   1 rWtkqevlaLiearremeerlrrgk..................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                          +Wt+ +v++Li a+ +++++ + +                   +kk++W++vs++m e+gf++sp+qC++k+++lnkryk+++++ +++t
  GSBRNA2T00028252001 110 KWTDTMVRLLIMAVFYIGDEAGGALggdqtdakkkiitggmmlQKKGKWKSVSRAMVEKGFSVSPQQCEDKFNDLNKRYKRVNDILGRGT 199
                          7**************8888887542334456677888899999**********************************************5 PP

             trihelix  73 .sessstcpyfdqle 86 
                           + ++++  +++ ++
  GSBRNA2T00028252001 200 aCHVVENQGLLEGMD 214
                          488898888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.7E-20108240No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MESNVMFTGF SPTMLSLETP QNPPNPVQFQ HPHPHPYTAA SDQQTHQQQM KPLYPYAAKA  60
KQLSPISVGG GGGGGEEDDR GSGSGSGCHP EDSAGTTDGK RKISPWHRMK WTDTMVRLLI  120
MAVFYIGDEA GGALGGDQTD AKKKIITGGM MLQKKGKWKS VSRAMVEKGF SVSPQQCEDK  180
FNDLNKRYKR VNDILGRGTA CHVVENQGLL EGMDHLTPKL REEVKKLLNS KHLFFKEMCA  240
YHNSCGHLDQ PGLMNQVPVQ SKPDFQMARI VEREEEEEEE GESDMAEDSE TEIEDTDEEE  300
EEETSKKRRV SAAVKRMREE TARVLDDPGK SAWEKKEWMR RKALEIEERK VGYEWEAVEM  360
EKQRVKWVRY RSKKEREMEK AKLENQRRSL ETERLVLVLR RREIELTELQ LAGKRVDPSS  420
ATG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.65520.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00028252001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009146876.10.0PREDICTED: uncharacterized protein LOC103870494
TrEMBLA0A078J6L40.0A0A078J6L4_BRANA; BnaAnng16550D protein
STRINGBra029813.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67622741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.11e-165sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]