PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00026805001
Common NameGSBRNA2T00026805001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 273aa    MW: 31883.8 Da    PI: 4.9165
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00026805001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM28.83.5e-0915425434128
                  NAM  34 ikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy........kgra 113
                              d+y v+P++L  +   +++ + +  F++r ++           +sg+W+   +d++++s ++e++g k+++ fy        +  +
  GSBRNA2T00026805001 154 YVANDVYCVHPSTLVdHeDKRSTASGLCVFANRTEACG--YT--DGCESGRWRIMEEDNAIFSMSHEVMGYKRVFKFYeedkgryfDIVD 239
                          55669*********732233334457799999888764..33..33579*****************************555333221223 PP

                  NAM 114 pkgektdWvmheyrl 128
                           + +  +W+m+eyrl
  GSBRNA2T00026805001 240 GEQVLRTWIMEEYRL 254
                          3345678******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510057.443196IPR003441NAC domain
SuperFamilySSF1019418.24E-75194IPR003441NAC domain
PROSITE profilePS5100514.735121270IPR003441NAC domain
SuperFamilySSF1019412.75E-20137268IPR003441NAC domain
PfamPF023659.3E-5159254IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MEEIRAAKYP DVKDDHSKAT DEKMMSIYLQ SINDNGESWP EEFMEDRDVR GYWEDSRFCG  60
ETQARGYKRT WVMQQYRLPS KWNPKQDHVV CKIQLLFQTE ISFLLAKHFT YSADPLPATQ  120
SLTAYGIRLA NQQDDGAYYL QVIFDSGGNE WPCYVANDVY CVHPSTLVDH EDKRSTASGL  180
CVFANRTEAC GYTDGCESGR WRIMEEDNAI FSMSHEVMGY KRVFKFYEED KGRYFDIVDG  240
EQVLRTWIME EYRLVEEAMK DKVLCVIKRG RR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00026805001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022549325.10.0uncharacterized protein LOC106362690
TrEMBLA0A078GGK00.0A0A078GGK0_BRANA; BnaA01g22100D protein
STRINGBra031518.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60280.13e-69NAC domain containing protein 23
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]