PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00026063001
Common NameGSBRNA2T00026063001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 414aa    MW: 45528.5 Da    PI: 8.8593
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00026063001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.2e-052949323
                         ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                         C+ C+k F r  nL+ H r H
  GSBRNA2T00026063001 29 CEVCNKGFQREQNLQLHRRGH 49
                         *******************88 PP
2zf-C2H211.70.00082104125223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                           C++C+k++  +s+ k H + +
  GSBRNA2T00026063001 104 NCEKCSKRYAVQSDWKAHSKIC 125
                          6*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.98E-72649No hitNo description
Gene3DG3DSA:3.30.160.607.5E-62649IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.972749IPR007087Zinc finger, C2H2
SMARTSM003550.0252749IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802949IPR007087Zinc finger, C2H2
SMARTSM00355586898IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.4E-591124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.98E-798123No hitNo description
SMARTSM00355220103123IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
RNQPGNSYPD AEVIALSPKT IMATNRFLCE VCNKGFQREQ NLQLHRRGHN LPWKLKQKSN  60
KEVRRKVYIC PEPTCVHHDP SRALGDLTGI KKHYYRKHGE KKWNCEKCSK RYAVQSDWKA  120
HSKICGTKEY RCDCGTIFSR RDSYITHRAF CDALIQESAR NPTVSFTAIA AASGGGGRHG  180
FYGGASSALS HNHFGNNSNT GFTPLAAGYN LNRSSSEKFE DFIPQPTNPY HGPNNFLMQC  240
SSNQGLLEHN DQSLLNQHGM ISLGDTINNN NNNLFNLGNF QLNIKNSDQI SAPSLFADGA  300
ENNDPSALLR GLTSSSSSSA VVNEFGDNVN GNLHGLMNSL ATTTDQQGRS GSSIFDLHFG  360
NNLSMGGSDR LTLDFLGVNG RVMSNVNGRG GRNPAPLDTE MKFSQPNHPF ERA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-3399165369Zinc finger protein JACKDAW
5b3h_F2e-3399165369Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.171500.0seed
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00026063001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018510654.10.0PREDICTED: LOW QUALITY PROTEIN: protein indeterminate-domain 6, chloroplastic-like
SwissprotQ8RWX70.0IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic
TrEMBLA0A078J7N00.0A0A078J7N0_BRANA; BnaA09g56910D protein (Fragment)
TrEMBLA0A3P5YJV60.0A0A3P5YJV6_BRACM; Uncharacterized protein
STRINGBra026819.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36781759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.20.0C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  4. Bustillo-Avendaño E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]