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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00025896001 | ||||||||
Common Name | GSBRNA2T00025896001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 297aa MW: 32771.2 Da PI: 7.4021 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.8 | 1.2e-29 | 131 | 189 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++prsYYrC+s+ gC ++k+ver+ ++ + ++itY++eH+he GSBRNA2T00025896001 131 SDAWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVERNPQNSEKFTITYTNEHDHE 189 7**************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.7E-30 | 116 | 191 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.202 | 125 | 191 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-25 | 125 | 191 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.5E-34 | 130 | 190 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-24 | 132 | 188 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MDEGDLEAVV RGYSSCSDAF SGKSSGGFSP SFCLPVETAS LYEEEMETTG LDELGVLYKP 60 FYTSSTQTLT NPVSVSEDSG RSRDGKKQRT HGCLLANGSR VNRIRIPESW KSRKNQQKRV 120 VGQVKEENLL SDAWAWRKYG QKPIKGSPYP RSYYRCSSSK GCLARKQVER NPQNSEKFTI 180 TYTNEHDHEI PTRRNSLAGT TRAKSSKPKP SITKKSGKQV VSSPTSNPVI TSGDESSVVV 240 QAMEVAEMST YQTTGEIEGT SNNLPTDLSS DTGHNPSDFD EILNSPEFIN GYLWDY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-18 | 128 | 191 | 12 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 22, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00025896001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced 30 minutes after flagellin treatment. {ECO:0000269|PubMed:11875555}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022549945.1 | 0.0 | probable WRKY transcription factor 29 | ||||
Swissprot | Q9SUS1 | 1e-160 | WRK29_ARATH; Probable WRKY transcription factor 29 | ||||
TrEMBL | A0A078J1E2 | 0.0 | A0A078J1E2_BRANA; BnaC01g15320D protein | ||||
TrEMBL | A0A3P6F9K1 | 0.0 | A0A3P6F9K1_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g035810.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6090 | 25 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23550.1 | 1e-130 | WRKY family protein |