PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00025492001
Common NameGSBRNA2T00025492001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 448aa    MW: 50547.8 Da    PI: 4.8716
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00025492001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.53.6e-30284341259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          dDgy+WrKYG+K v+g+ +prsYY+Ct+ gC+vkk+ver a+d k++++tY g+Hnh+
  GSBRNA2T00025492001 284 DDGYQWRKYGRKIVNGNSNPRSYYKCTYGGCNVKKHVERGADDVKLLVVTYDGKHNHP 341
                          8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-30268343IPR003657WRKY domain
SuperFamilySSF1182906.54E-26278343IPR003657WRKY domain
PROSITE profilePS5081131.227278343IPR003657WRKY domain
SMARTSM007743.6E-33283342IPR003657WRKY domain
PfamPF031063.6E-24284341IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MSDWSGNSIE IWNPPKMSDC DGIVRAMLEQ TDNGLNSISQ IFPKTNLSTN HQSEQRSSLG  60
ERVSSRIRFN VPPLETENIM SPFAVSRSQT NVPSPLIAVS PGFSPSALLQ SPKKFSNSFS  120
QHIIQSRVAN DGPPEMVESS GGDYATTTIF NNDVPHQPMN FDHMPHHEGF YDIPTEQSVY  180
VPSHESHADL IGGPLVTSFE SDEVANETDI MNIISLDSED EDEDYKEDEE YKEDENVDEE  240
DDSVDELPPR KRRKYEVSDM FGAKRTRKDE RVILRMECEE DNPDDGYQWR KYGRKIVNGN  300
SNPRSYYKCT YGGCNVKKHV ERGADDVKLL VVTYDGKHNH PIPTGRSSNR SGPRNRSGFS  360
VSQTPRLGRL PSSSSACQYC YSSLEPHPDM ALLYMTGLSK LQSFPVNHNH GFMYRHDEPI  420
IDRVIPDGTE VYNGMKDRLL PNFGFNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-232793431377Probable WRKY transcription factor 4
2lex_A5e-232793431377Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the endosperm of embryo from the two nuclei stage to the late globular embryo stage, including the endosperm cellularization time. {ECO:0000269|PubMed:16293693}.
UniprotTISSUE SPECIFICITY: Expressed in male gametophytes (pollen) and in the endosperm of fertilized ovules. {ECO:0000269|PubMed:16293693}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates seed size by negatively regulating the cellularization of syncytial endosperm (PubMed:16293693). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:16293693}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00025492001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931440.0KM593144.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY41) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009106849.10.0PREDICTED: probable WRKY transcription factor 10 isoform X2
RefseqXP_009106853.10.0PREDICTED: probable WRKY transcription factor 10 isoform X5
RefseqXP_009106854.10.0PREDICTED: probable WRKY transcription factor 10 isoform X5
SwissprotQ9LG051e-123WRK10_ARATH; Probable WRKY transcription factor 10
TrEMBLA0A078J1060.0A0A078J106_BRANA; BnaA08g29320D protein
STRINGBra030847.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102991733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55600.13e-57WRKY DNA-binding protein 10
Publications ? help Back to Top
  1. Li J,Nie X,Tan JL,Berger F
    Integration of epigenetic and genetic controls of seed size by cytokinin in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(38): p. 15479-84
    [PMID:24003120]
  2. Fatihi A,Zbierzak AM,Dörmann P
    Alterations in seed development gene expression affect size and oil content of Arabidopsis seeds.
    Plant Physiol., 2013. 163(2): p. 973-85
    [PMID:24014578]
  3. Liu P, et al.
    Arabidopsis RAN1 mediates seed development through its parental ratio by affecting the onset of endosperm cellularization.
    Mol Plant, 2014. 7(8): p. 1316-1328
    [PMID:24719465]
  4. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  5. Xiao YG,Sun QB,Kang XJ,Chen CB,Ni M
    SHORT HYPOCOTYL UNDER BLUE1 or HAIKU2 mixepression alters canola and Arabidopsis seed development.
    New Phytol., 2016. 209(2): p. 636-49
    [PMID:26389843]
  6. Meng LS,Wang YB,Loake GJ,Jiang JH
    Seed Embryo Development Is Regulated via an AN3-MINI3 Gene Cascade.
    Front Plant Sci, 2016. 7: p. 1645
    [PMID:27857719]
  7. Meng LS,Wang YB,Loake GJ,Jiang JH
    Corrigendum: Seed Embryo Development Is Regulated via an AN3-MINI3 Gene Cascade.
    Front Plant Sci, 2017. 8: p. 1073
    [PMID:28616014]