PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00025125001 | ||||||||
Common Name | GSBRNA2T00025125001, LOC106449050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 321aa MW: 36468 Da PI: 9.3077 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 93.1 | 1.9e-29 | 41 | 145 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+kv tpsdv+k++rlv+pk++ae++ +++++++ l +ed+ g W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ GSBRNA2T00025125001 41 FDKVVTPSDVGKLNRLVIPKQHAERYfpldnnSSDNNKGLLLNFEDRIGILWSFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFHR 130 89****************************99666678899************************************************6 PP -SS.SEE..EEEEE-S CS B3 85 dgr.sefelvvkvfrk 99 + ++ +l++ + r+ GSBRNA2T00025125001 131 G-ScNKDKLFIDWKRR 145 5.44788888888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.0E-41 | 31 | 151 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.1E-31 | 38 | 148 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.55E-24 | 39 | 130 | No hit | No description |
PROSITE profile | PS50863 | 13.296 | 41 | 146 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-21 | 41 | 146 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.0E-27 | 41 | 145 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MERKSNDLER SENIDSQNKK MNLEEERPVQ EASSMEREHM FDKVVTPSDV GKLNRLVIPK 60 QHAERYFPLD NNSSDNNKGL LLNFEDRIGI LWSFRYSYWN SSQSYVMTKG WSRFVKDKKL 120 DAGDIVSFHR GSCNKDKLFI DWKRRPKIPD HQVVGAMFPR FYSYPYPQIQ ASYERHNLYH 180 RYQRDIGIGY YVRSMERYDP TAVIESVPVI MQRRAHVATM ASSRGEKRLR LFGVDMECVR 240 GGRGGGGSVN STEEESSTSG GSISRGGVSM AGVGSPLQLR LVSSDGDDQS LVAMGAARVD 300 EDHHLFTKKG KSSLSFDLDK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 7e-59 | 36 | 148 | 3 | 116 | B3 domain-containing transcription factor NGA1 |
5os9_B | 7e-59 | 36 | 148 | 3 | 116 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 240 | 246 | GGRGGGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Regulates lateral organ growth. Functionally redundant with NGA1, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00025125001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013746312.1 | 0.0 | B3 domain-containing transcription factor NGA2 | ||||
Swissprot | Q9M268 | 1e-159 | NGA2_ARATH; B3 domain-containing transcription factor NGA2 | ||||
TrEMBL | A0A078J0P6 | 0.0 | A0A078J0P6_BRANA; BnaA04g27480D protein | ||||
TrEMBL | A0A3P6BW44 | 0.0 | A0A3P6BW44_BRACM; Uncharacterized protein | ||||
STRING | Bra014415.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1307 | 28 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61970.1 | 1e-149 | B3 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106449050 |
Publications ? help Back to Top | |||
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