PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00025123001
Common NameGSBRNA2T00025123001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 319aa    MW: 36199.7 Da    PI: 9.3078
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00025123001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B393.21.9e-2941145199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+kv tpsdv+k++rlv+pk++ae++      +++++++  l +ed+ g  W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++
  GSBRNA2T00025123001  41 FDKVVTPSDVGKLNRLVIPKQHAERYfpldnnSSDNNKGLLLNFEDRIGILWSFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFHR 130
                          89****************************99666678899************************************************6 PP

                          -SS.SEE..EEEEE-S CS
                   B3  85 dgr.sefelvvkvfrk 99 
                            + ++ +l++ + r+
  GSBRNA2T00025123001 131 G-ScNKDKLFIDWKRR 145
                          5.44788888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-4131151IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-3138148IPR015300DNA-binding pseudobarrel domain
CDDcd100174.97E-2439130No hitNo description
SMARTSM010191.2E-2141146IPR003340B3 DNA binding domain
PROSITE profilePS5086313.29641146IPR003340B3 DNA binding domain
PfamPF023625.9E-2741145IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MERKSNDLER SENIDSQNKK MNLEEERPVQ EASSMEREHM FDKVVTPSDV GKLNRLVIPK  60
QHAERYFPLD NNSSDNNKGL LLNFEDRIGI LWSFRYSYWN SSQSYVMTKG WSRFVKDKKL  120
DAGDIVSFHR GSCNKDKLFI DWKRRPKIPD HQVVGAMFPR FYSYPYPQIQ ASYERHNLYH  180
RYQRDIGIGY YVRSMERYDP TAVIESVPVI MQRRAHVATM ASSRGEKRLR LFGVDMECGR  240
GGRGGGASVN STEEESSTSG GSISRGGVSM AGVGSLLQLR LVSSDGDDQS LVAMGAANED  300
HHLFTKKGKS SLSFDLDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-59361483116B3 domain-containing transcription factor NGA1
5os9_B6e-59361483116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00025123001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013746312.10.0B3 domain-containing transcription factor NGA2
SwissprotQ9M2681e-161NGA2_ARATH; B3 domain-containing transcription factor NGA2
TrEMBLA0A078J6T80.0A0A078J6T8_BRANA; BnaA04g27470D protein
STRINGBra014415.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.11e-151B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]