PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00024513001 | ||||||||
Common Name | GSBRNA2T00024513001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 794aa MW: 87432 Da PI: 7.6378 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.6 | 2.2e-18 | 292 | 391 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+l+ sd+++ grlvlpk +ae++ +++ e++ l+++d +g++W++++++ +++s++yvl+ G ++ L++gD+v+F++++ GSBRNA2T00024513001 292 FEKTLSASDAGRIGRLVLPKACAEAYfpPISQSEGIPLKIQDVRGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMMLQAGDTVTFSRVD 380 99**************************666678889***************9989999999***9.********************765 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 +++l +++++ GSBRNA2T00024513001 381 -PGGKLIMGARK 391 .88888877765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.62E-19 | 289 | 387 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.7E-28 | 289 | 392 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.60E-23 | 290 | 391 | No hit | No description |
SMART | SM01019 | 6.5E-22 | 292 | 393 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.1E-16 | 292 | 391 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.673 | 292 | 393 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 13.466 | 548 | 598 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 6.2E-8 | 554 | 595 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 794 aa Download sequence Send to blast |
MFEVKTGSKV CMNASCGSTS TVEWKKGWPL RSGSLADLCF RCGSAYETSL FCETFHLEQS 60 GWRDCYLCNK RLHCGCIASK LMVEFMDYGG VGCTSCTNCH QLNLNKRGEN PVVFSRLAMN 120 SQHTNGESGI SSIRSEADLF SQPLVPGDDK REEFMAQRGF ANFMKPDNNN AGEMHEPSST 180 PSQPSLNMAL ATLPYSPSFA TPVVDGKTLM GAASQSQSHI GQCSASSILQ KPSKSVPGTP 240 PGTSKSAQAR IGRPPVEGRG KGHLLPRYWP KYTDKELQQI SGNLNLNIVP LFEKTLSASD 300 AGRIGRLVLP KACAEAYFPP ISQSEGIPLK IQDVRGKEWT FQFRFWPNNN SRMYVLEGVT 360 PCIQSMMLQA GDTVTFSRVD PGGKLIMGAR KAAYTVDMQV WVSTSYIRAR THPAQPNPKL 420 IRPNRDPIDL EPNPTSINAS SCPSQTPEEL KGLPEHLSLK KSEMNGGRIC DDPSRVKDKK 480 RTRTIGAKNK RLLLHSEELR VTWEEAQELL RPSPNAKPTV VVVEDHEFEE FDEPPVFGKR 540 TIITSRPSGE QERWASCDDC TKWRRLPVDA LLPAKWTCSD NVWDVSRCSC CAPEESLKDL 600 ENVLRAGKEY KKRRIQAAKT EEEPSGLDAL ASAASAAVLG DALGGDSEVA TTTRHPRHRV 660 GCSCIVCIQP PSGKGRHKPT CGCTVCSTVK RRFKTLMMRR KKKQLERDEI AAAAEAYEEH 720 NNKEAAEQGE TDENNGEKEG RIDLNCDPYN REDVEAVKEE SKRRECSGVA DDVLGLTELG 780 GEAASCEELK AAT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 8e-83 | 270 | 399 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 689 | 701 | KRRFKTLMMRRKK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and at lower levels in roots, stems and leaves. {ECO:0000269|PubMed:15894743}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL2/HSL1. {ECO:0000269|PubMed:15894743, ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00024513001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353502 | 0.0 | AK353502.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-47-G20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013630357.1 | 0.0 | PREDICTED: B3 domain-containing transcription repressor VAL1-like | ||||
Swissprot | Q8W4L5 | 0.0 | VAL1_ARATH; B3 domain-containing transcription repressor VAL1 | ||||
TrEMBL | A0A078GFU6 | 0.0 | A0A078GFU6_BRANA; BnaC03g16940D protein | ||||
STRING | Bo3g024640.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6923 | 24 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30470.1 | 0.0 | high-level expression of sugar-inducible gene 2 |