PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00024504001
Common NameGSBRNA2T00024504001, LOC106387862
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 341aa    MW: 38001 Da    PI: 10.2824
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00024504001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.8e-31274332360
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                          D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp ++++tYe eHnh+k
  GSBRNA2T00024504001 274 DDYSWRKYGQKPIKGSPYPRGYYKCSSIrGCPARKHVERCLEDPAMLIVTYEAEHNHPK 332
                          99***********************9988****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.1E-17223270IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.1E-33260332IPR003657WRKY domain
PROSITE profilePS5081130.366267333IPR003657WRKY domain
SuperFamilySSF1182901.15E-26270332IPR003657WRKY domain
SMARTSM007741.6E-36272332IPR003657WRKY domain
PfamPF031063.9E-26274331IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEEIEGTNRA AVESCHRVLN LISSRPHQQD HLYDMSLLSE AREAVFRFKR VGNLLSNSSS  60
SSSVGHARFR RAKRPLIHLS QTIFLDSCLQ RTEPPSSQKA PVVLRSDLSL GPADSLTLGT  120
RSFGLNSNAK APLLQLNPQQ QQQLHERLQA HQQQQQRHQA EMMLRKCNSG MSLSFDNSSC  180
TPTMSSTRSF ISSLSIDGSV NNSSSFHLLG APSSTDQSSQ YSKRKCLMRG ADEHGSAKCG  240
SSSRCHCSKK RKHRIRRSIR VPAISNKVAD IPPDDYSWRK YGQKPIKGSP YPRGYYKCSS  300
IRGCPARKHV ERCLEDPAML IVTYEAEHNH PKLPSQTVTT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20260335276WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00024504001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300390.0KF430039.1 Brassica rapa WRKY transcription factor 21 (WRKY21) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013630723.10.0PREDICTED: probable WRKY transcription factor 21
RefseqXP_013683247.10.0probable WRKY transcription factor 21
SwissprotO043361e-166WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A078GH670.0A0A078GH67_BRANA; BnaC03g17030D protein
TrEMBLA0A0D3B4960.0A0A0D3B496_BRAOL; Uncharacterized protein
STRINGBo3g024750.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35672861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.13e-83WRKY DNA-binding protein 21
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]