PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00024431001
Common NameGSBRNA2T00024431001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 366aa    MW: 41299.9 Da    PI: 9.4402
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00024431001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.62.9e-155821798
                         E--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3 17 vlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                         ++p  f+++h    ++++++++l+    s ++Wevk   + ++ r  lt+GWkeF+ a++L++gD+++F+ +++++f  +v++f 
  GSBRNA2T00024431001  5 TIPVAFFSKHiqgRNDQKTTTELRSDAASEKTWEVKT--EDGR-R--LTDGWKEFALAHDLRVGDILIFRQEKDMTF--HVTLFG 82
                         79*********7633333445666666899*******..4444.3..9**********************5555555..999886 PP
2B370.62e-22131213894
                          -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                          +++l+ + l lp++f++++g++++++ +++l + +grsW++ l+ +++ gr ++t+GW++F +angLk+gD+++Fkl++r ++  +v
  GSBRNA2T00024431001 131 PSTLRYDSLNLPRSFVRANGLETRCG-DIVLINGKGRSWTLSLK-QRQCGRSYITRGWRSFFSANGLKAGDSFTFKLIKRGGT--LV 213
                          67788899*************99887.****************5.666666789************************97554..34 PP
3B352.78e-17272359293
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                          ++ ++++++  ++ l lpk+f++ hg+    +++++l d++g +W  kl  r  s+r+ +++GWk+F kan +k+g+++ +kl+++++++
  GSBRNA2T00024431001 272 VTLTLKPYNVIKRVLFLPKPFTDLHGIT--VGTKMSLVDKQGVKWCTKL--RSESKRIRMAGGWKDFFKANCVKTGESIKLKLIWEEDTS 357
                          55566677777778********999876..4569***************..**********************************98775 PP

                          .E CS
                   B3  92 lv 93 
                          +v
  GSBRNA2T00024431001 358 CV 359
                          55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.112184IPR003340B3 DNA binding domain
SMARTSM010191.1E-8284IPR003340B3 DNA binding domain
SuperFamilySSF1019361.16E-15591IPR015300DNA-binding pseudobarrel domain
PfamPF023621.0E-10581IPR003340B3 DNA binding domain
CDDcd100172.02E-13581No hitNo description
Gene3DG3DSA:2.40.330.107.1E-22696IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-23117217IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-20118216IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.876124219IPR003340B3 DNA binding domain
CDDcd100178.94E-21124215No hitNo description
SMARTSM010191.6E-25125220IPR003340B3 DNA binding domain
PfamPF023622.1E-20129213IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-16263356IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-17269358IPR015300DNA-binding pseudobarrel domain
CDDcd100175.60E-14270360No hitNo description
SMARTSM010191.2E-18271364IPR003340B3 DNA binding domain
PfamPF023628.2E-15271359IPR003340B3 DNA binding domain
PROSITE profilePS5086312.83271365IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MLLQTIPVAF FSKHIQGRND QKTTTELRSD AASEKTWEVK TEDGRRLTDG WKEFALAHDL  60
RVGDILIFRQ EKDMTFHVTL FGPSCCEIQY DSCLDDKNSI GKINSKKNNP KREAECSSSS  120
DPSCFLANVM PSTLRYDSLN LPRSFVRANG LETRCGDIVL INGKGRSWTL SLKQRQCGRS  180
YITRGWRSFF SANGLKAGDS FTFKLIKRGG TLVLLHKSPS HRESKENEGS EADDEIESLS  240
TESDSDEESN QDEKKRISIW NASSSPSLNR FVTLTLKPYN VIKRVLFLPK PFTDLHGITV  300
GTKMSLVDKQ GVKWCTKLRS ESKRIRMAGG WKDFFKANCV KTGESIKLKL IWEEDTSCVL  360
SSKPR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.292691e-163leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00024431001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894330.0AC189433.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068H20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013628153.10.0PREDICTED: B3 domain-containing protein REM14-like
SwissprotO230766e-95REM15_ARATH; Putative B3 domain-containing protein REM15
TrEMBLA0A078GBT90.0A0A078GBT9_BRANA; BnaC03g17610D protein
STRINGBo3g025330.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.13e-88B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]