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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00024289001 | ||||||||
Common Name | GSBRNA2T00024289001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 141aa MW: 15447.5 Da PI: 7.2516 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.9 | 3.6e-08 | 2 | 35 | 20 | 55 |
HHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 20 feeLrellPk.askapskKlsKaeiLekAveYIksLq 55 f+ Lr++lP + +skKls ++++ +A +YI +Lq GSBRNA2T00024289001 2 FSSLRSCLPAsD---QSKKLSVSATVSHALNYIPELQ 35 899*******66...********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.28 | 1 | 34 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.68E-9 | 1 | 52 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.99E-7 | 1 | 39 | No hit | No description |
Pfam | PF00010 | 1.9E-5 | 2 | 35 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.3E-6 | 2 | 52 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MFSSLRSCLP ASDQSKKLSV SATVSHALNY IPELQEQVKQ LIKKKDDLSF QISGQKDLVY 60 ADQNGNPEKG GTRYASTVSA TRLGETEVMV QISSLQTVKC SFGNLLGGIE EDGLVLMDAS 120 SSRSQGERLF YTYFRWIIAI * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, and stems. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in metal homeostasis. Confers tolerance to high zinc (Zn) and nickel (Ni). {ECO:0000269|PubMed:18088336}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00024289001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up regulated by iron deficiency in roots and leaves, as well as by nickel, high zinc or high copper treatments. Repressed by heat treatment, high iron, low copper and low zinc treatments. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:17516080, ECO:0000269|PubMed:18088336}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013635081.1 | 2e-96 | PREDICTED: transcription factor bHLH100-like | ||||
Swissprot | Q9ZVB5 | 1e-62 | BH100_ARATH; Transcription factor bHLH100 | ||||
TrEMBL | A0A078GEP9 | 2e-98 | A0A078GEP9_BRANA; BnaC04g01760D protein | ||||
STRING | Bo4g013080.1 | 7e-96 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM482 | 28 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41240.1 | 6e-65 | basic helix-loop-helix protein 100 |